Jeffrey, C. F. G., S. D. Hile, C. Addison, J. S. Ault, C. Currin, D. Field, N. Fogarty, J. Luo, V. McDonough, D. Morrison, G. Piniak, V. Ransibrahmanakul, S. G. Smith, S. Viehman. 2012. Assessment of natural resource conditions in and adjacent to Dry Tortugas National Park. Natural Resource Report NPS/DRTO/NRR—2012/558. National Park Service, Fort Collins, Colorado.
Fogarty, N.D., M. Lowenberg, M.N. Ojima, and N. Knowlton, D.R. Levitan,. Asymmetric conspecific sperm precedence in relation to spawning times in the Montastraea annularis species complex (Cnidaria: Scleractinia). Journal of Evolutionary Biology 25:2481-2488.
Fogarty, N.D. Caribbean acroporid hybrids are viable across life history stages. 2012. Caribbean acroporid coral hybrids are viable across life history stages. Marine Ecology Progress Series, 446: 145-159.
Fogarty, N.D., S.V. Vollmer, D.R. Levitan. Weak prezygotic isolating mechanisms in threatened Caribbean Acropora species. PLoS ONE 7(2): e30486.doi:10.1371/journal.pone.0030486
Piniak, G., Viehman, S., Addison, C. and Fogarty, N. 2011. Characterization of Benthic Communities. pp 31-42. In: C.F.G. Jeffrey, V.R. Leeworthy, M.E., Monaco, G. Piniak, M. Fonseca (eds.). 2010. An Integrated Biogeographic Assessment of Reef Fish Populations and Fisheries in Dry Tortugas: Effects of No-take Reserves. NOAA Technical Memorandum NOS NCCOS 111. Prepared by the NCCOS Center for Coastal Monitoring and Assessment Biogeography Branch. Silver Spring, MD. 147 pp.
Levitan, D.R., N.D. Fogarty, J. Jara, Kathleen Lotterhos, and N.Knolwton. 2011. Genetic, spatial and temporal components to precise spawning synchrony in reef building corals of the Montastraea annularis species complex. Evolution 65 (5): 1254-1270
Fogarty, N.D. 2010. Reproductive isolation and hybridization dynamics in threatened Caribbean acroporid corals. [dissertation] Florida State University, Tallahassee, Florida.
Arnold, M.L., N.D. Fogarty. 2009. Reticulate Evolution and Marine Organisms: The Final Frontier? 2009. Int. J. Mol. Sci. 10(9): 3836-3860.
Ritson-Williams, R., S. Arnold, N.D. Fogarty, R. Steneck, M. Vermeij and V. Paul. 2009. New perspectives on ecological mechanisms affecting coral recruitment on reefs. Smithsonian Contributions to Marine Science, 38:437-457.
Levitan, D.R., C.P. terHorst, N.D. Fogarty. 2007. The risk of excess sperm in three congeneric sea urchins. Evolution. 61(8):2007-2014.
Vermeij, M.J.A., N.D. Fogarty, M.W. Miller. 2006. Pre- and post-settlement dynamics of Caribbean coral planulae in a variable planktonic environment. Marine Ecology Progress Series 310:119-128.
Piniak, G.A, N.D. Fogarty, C.M. Addison. 2005. Fluorescence census techniques for coral recruits. Coral Reefs 24(3): 496-500.
Fogarty, N.D. and M. Enstrom. 2002. Sea Stewards a volunteer ecological monitoring program. Pages 27-30 in US Department of Commerce. Sanctuary Monitoring Report 2000. Florida Keys National Marine Sanctuary, Marathon, Florida USA.
Fogarty, N.D., B.D. Keller, and P.B. Dye. 2001. Effects of installing flow-through culverts on canal water quality and benthic communities at Jolly Roger Estates. Final Report. The Nature Conservancy, Key West, Florida.