* indicates those publications with students.

BLACKWELDER, PATRICIA L., Ph.D., Associate Professor

Publications

Nelsen, T.A., H. R. Wanless, J. H. Trefry, C.A. Alvarez Zarikian, T. Hood, P.L. Blackwelder, P.K. Swart, L. Tedesco, W-J. Kang, S. Metz, J., Garte, C. Featherstone, C. Souch, J. F. Pachut, M. O'Neal, and G. Ellis. 2002. Linkages between the South Florida peninsula and coastal zone: A sediment-based history of natural and anthropogenic influences. In: Karen and James Porter (Eds.) The Everglades, Florida Bay, and Coral Reefs of the Florida Keys: An Ecosystem Sourcebook. CRC Press. 1-1000.

Alvarez-Zarikian, C.A., P.K. Swart, T. Hood, P.L. Blackwelder, T.A. Nelsen, and C. Featherstone. 2001. A century of environmental variability in Oyster Bay using ostracode ecological and isotopic data as paleoenvironmental tools. In Wardlaw, B. R. (Ed.), Paleoecological studies of South Florida. Bulletins of American Paleontology, 361, 133-143.

Soter, S., P.L. Blackwelder, C. Tziavos, D. Katsonopoulou, T. Hood, and C.A. Alvarez-Zarikian. 2001. Environmental analysis of cores from the Helike delta, Gulf of Corinth, Greece. Journal of Coastal Research, 17(1): 95-106

Alvarez-Zarikian, C.A., P.L. Blackwelder, T. Hood, T.A. Nelsen, and C. Featherstone. 2000. Ostracodes as indicators of natural and anthropogenically-induced changes in coastal marine ecosystems. Proceedings from The Coastal Society Conference: Coast at the Millennium, Portland, Oregon, 896-905.

Hood. T., C. Alvarez-Zarikian, P. Blackwelder, T. Nelsen, P. Swart, and C. Featherstone. 2000. Identifying multiple stressors in the coastal ocean: the role of microfauna in discriminating between natural and anthropogenic influences. Proceedings of The 2000 Coastal Society Conference, Portland, Oregon, pp. 697-699.

Levinson H.S., I. Mahler, P. Blackwelder, T. Hood, 1996. Lead resistance sensitivity in Staphilococcus aureus. FEMS Microbiology Letters,145:421-425.

Blackwelder, P., T. Hood, C.A. Alvarez Zarikian, T.A. Nelsen and B. McKee. 1996.Benthic foraminifera from the NECOP study area impacted by the Mississippi River plume and seasonal hypoxia. Quaternary International,vol. 31, pp. 19-36.

Nelsen, T. A., P. Blackwelder, T. Hood, C.A. Alvarez Zarikian, J. Trefry, S. Metz, B. Eadie, B. McKee, 1995. Retrospective analysis of NECOP area sediments; biogenic, inorganic and organic indicators of anthropogenic influences since the turn of the century. Pp. 90-101.In: Nutrient Enhanced Coastal Ocean Productivity, Proceedings of 1994 Synthesis Workshop, Baton Rouge, Louisiana.

Nelsen, T.A., P. Blackwelder, T. Hood, B. McKee, N. Romer, C.A. Alvarez Zarikian and S. Metz, 1994. Time-based correlation of biogenic, lithogenic and authigenic sediment components with anthropogenic inputs in the Gulf of Mexico NECOP study area. Estuaries, vol. 17, pp. 873-885.

Nelsen, T. A., P. Blackwelder, T. Hood, C.A. Alvarez Zarikian, J. Trefry, and S. Metz, 1994. The sedimentary record in the NECOP study area: A history of anthropogenic impact. EOS, 75:51.

Robbins, L. and P.L. Blackwelder, 1992. Biochemical and ultrastructural evidence of the origin of whitings: a biologically induced calcium carbonate precipitation mechanism. Geology, 20:464-468.

Takahashi, K. and P.L. Blackwelder, 1992. Silicoflagellate distribution in the NW Atlantic and warm core rings. Deep-Sea Research, 39:327-346.

Walsh, P.J., P.L. Blackwelder, K.A. Gill, E. Danulat and T.P. Mommsen. 1991. Carbonate production in the intestine of marine fish: a new source of carbonate sediment. Limnology and Oceanography, 36(6):1227-1232.

Robbins, L., P. Blackwelder. 1989. Whiting Sediment: Biologically induced non-skeletal precipitation of Aragonite. St. Croix Caribbean Conference, August 1989.

Rai, V., R. Pardo, P.L. Blackwelder, and V. Falonga. 1989. Leg ulcers following subcutaneous injection of liquid silicone. Ark Amer. Derm., June.

Dudley, W., P.L. Blackwelder, L. Brand, and J-C. Dulessey, 1986. Stable isotopic composition of coccoliths. Marine Micropaleontology, Vol. 10, 1-8.

Tangen, K., L. Brand, P.L. Blackwelder, and R.R.L. Guillard, 1982. Thoracospaera hemii is a dinoflagelate. Taxonomic affinity and division cycle. Marine Micropaleontology, 7:193-212.

Blackwelder, P.L. 1982. Phytoplankton on the Gulf Stream warm core rings. EOS, Nov. 1982.

Dudley, W., J.C. Duplessey, P.L. Blackwelder, L. Brand, R. Guillard, 1980. Coccoliths in Pleistocene-Holocene nannofossils assemblages. Nature. 285:222-223.

Watabe, N. and P.L. Blackwelder, 1980. Ultrastructure and calcium localization in the mantle epithelium of freshwater gastropod Pomacea paludosa during shell regeneration. In: Mechanisms of biomineralization in animals and plants. Omori and N. Watabe (eds) Tokai University Press, Tokyo, 131-134.

Blackwelder, P.L. 1970. Electron microscopy of quartz from the eastern United States and Scotland continental margins. M.A. Thesis, Duke University, 1973 pp.

Technical reports

Blackwelder,P.L., C. A. Zarikian, T. Hood, C. Featherstone, J. Proni, J. Craynock. 2004. Microfauna as Tracers of Sediment Transport: Ft. Pierce Dredge Spoils Sediment Study, CIMAS, University of Miami, Annual Report to NOAA 2004, 81-82.

Blackwelder, P.L., and S.B. Hooker. 1988. Summaries of data of a geologically significant subset from warm core rings of the western north Atlantic (September 1981-October 1982). Report #86-1, 109 pp., Nova University Oceanographic Center, Dania, FL 33004.

Abstracts

Vargas-Angel,B, B.M. Riegl, R.E. Dodge, P. Blackwelder, T. Snell, D.S. Gilliam, L. Fisher, E.C. Hodel, D. Renegar. 2005. A Higher Resolution, Multi-Layered Approach to Assessing Sedimentation Stress in Coral Reefs. ASLO Summer Meeting, June, 2005, Spain.

Blackwelder, P., T.Hood, P.K. Swart, C. Featherstone, and T. Nelsen. 1999. Historical Salinitiy Effects on Microfauna in the Lower Everglades and Florida Bay. Florida Bay and Adjacent Systems Science Conference, Key Largo, F1 p. 18-21.

Blackwelder.,Hood, T. Alvarez-Zarikian,C.,Featherstone, C., Nelsen,T., Trefry,J. and Wanless, H. 1998. Paleoecological reconstruction of the Everglades Florida Bay System, I. Microfaunal abundance and diversity. Florida Bay Paleoecology Workshop, Jan l998.

Alvarez-Zarikian, C. Hood, T. Blackwelder, P., Nelsen, T. Trefry, J. and H. Wanless,H., 1998. Paleoecological reconstruction of the Everglades/Florida Bay System II. Do total microfaunal assemblages reflect in-situ populations? Florida Bay Paleoecology Workshop, Jan 1998

Ellis, G. Swart, Lutz, P., Alvarez-Zarikian, C. Hood, T., Blackwelder, P., Nelsen, T. Wanless, H. Trefry, T. 1998. The stable isotope composition of forminifera, ostracods and organics from a core in Whitewater Bay. Florida Bay Paleoecology Workshop, Jan. l998.

Hood, T., Alvarez-Zarikian, C., Blackwelder, P., Swart, P., Nelsen,T. Trefry, J., Wanless, T.,Tedesco L., O'Neal, M. 1998. The sediment in the Lower Everglades, Florida Bay System as a monitor of natural and anthropogenic changes in the Lower Everglades, Florida Bay System. Floirda Bay Science Conference, May, l998.

Alvarez Zarikian, C.A., P. Blackwelder and T. Hood, 1996. Ostracod assemblages from the Louisiana inner-continental shelf: impacts of low-oxygen bottom-waters and other phisico-chemical parameters. Abstract in Eos, Transactions, American Geophysical Union, Vol. 76, No. 3. 1996 Ocean Sciences Meeting-AGU.

Blackwelder, P., T. Hood, C.A. Alvarez Zarikian, T. Nelsen, B. McKee, 1996. Benthic foraminifer communities as indicators of hypoxic conditions: present distributions and historical trends from the Gulf of Mexico. Abstract in Eos, Transactions, American Geophysical Union, Vol. 76, No. 3, January 16, 1996 Ocean Sciences Meeting-AGU.

Nelsen, T., P. Blackwelder, T. Hood, C.A. Alvarez Zarikian, B. McKee, 1996. Man's diachronic influence on the marine environment: linking continents with the coastal ocean. Abstract in Eos, Transactions, American Geophysical Union, Vol. 76, No. 3, January 16, 1996. Ocean Sciences Meeting-AGU.

Blackwelder, P., P. Swart, C.A. Alvarez Zarikian, T. Hood, M. Zetwo, 1996. The sediment record as a monitor of natural and anthropogenic changes in the lower Everglades/Florida Bay ecosystem: microfaunal and stable isotopes, Abstract, 1996 Florida Bay Science Conference, Key Largo.

BURNEY, CURTIS M., Ph.D., Associate Professor

Publications

Burney, C.M. and Ouelette, S. 2005. Sea Turtle Conservation Project, Broward Co. Florida. Technical Report 2004. Broward County Environmental Protection Department, Biological Resources Division. Fort Lauderdale, Florida.

Dragojlovic, V. and C. Burney. 2004. Organic chemistry laboratory manual, 2004/2005. Premium SciTech, New Westminster, BC, Canada

Burney, C.M., W. Margolis, 1997. Sea Turtle Conservation Project, Broward County Florida. Technical Report 97-01. Broward County Department of Natural Resource Protection. Biological Resources Division. Ft. Lauderdale, Florida.42 pp.

Schmidt, S. Terri and C.M. Burney. 1997. Effects of ghost crab (Ocypode quadrata) invasion on loggerhead sea turtle (Caretta caretta) nests at Hillsboro Beach, Florida. Poster and abstract presented at the 17^th Annual Sea Turtle Symposium, March 3-7, 1997, Orlando Florida.

Burney, C.M. 1986. Bacterial utilization of total in- situ dissolved carbohydrate in offshore waters. Limnol. Oceanogr. 31:427-431.

Burney, C.M., W. Margolis. 1996. Sea Turtle Conservation Project, Broward County Florida. Technical Report 96-01. Broward County Department of Natural Resource Protection. Biological Resources Division. Ft. Lauderdale, Florida. 48 pp.

Burney, C.M., W. Margolis, 1995. Sea Turtle Orientation and Hatching Success Study. Technical Report 95-04. Broward County Department of Natural Resource Protection. Biological Resources Division. Ft. Lauderdale, Florida. 23 pp.

Burney, C.M., Margolis, W. 1995. Sea Turtle Conservation Project, Broward County Florida. Technical Report 95-05. Broward County Department of Natural Resource Protection. Biological Resources Division. Ft. Lauderdale, Florida. 46 pp.

*Burney, C.M., and W.E. Margolis. 1994. Sea turtle conservation project, Broward County, Florida. Report, Broward County Dept. of Natural Resource Protection, Ft. Lauderdale, FL, 44 pp.

*Mattison, C., C.M. Burney and L. Fisher. 1994. Trends in the spatial distribution of sea turtle activity on an urban beach (1981-1992). Proceedings of the Thirteenth Annual Sea Turtle Symposium, 22-26 Feb. 1993, Jekyll Island Georgia, pp. 102-104.

*Margolis, W.E. and C.M. Burney. 1994. Emergence periodicity of Caretta caretta in Broward County, Florida. Proceedings of the Thirteenth Annual Sea Turtle Symposium, 22-26 Feb. 1993, Jekyll Island Georgia, p 98-101.

Burney, C.M.. 1994. Seasonal and diel changes in dissolved and particulate organic matter. Chapter 5, In: The Biology of Dissolved and Particulate Organic Matter in Aquatic Systems and Marine Systems, R. Wotton, ed., Lewis Press, pp. 97-135.

*Burney, C.M. and C. Mattison, 1992. Sea Turtle Conservation Project, Broward Co. Florida. 1992 Report. Broward County Erosion Prevention District, Office of Natural Resource Protection. Fort Lauderdale, FL. 45 pp.

*Burney, C.M. and C. Mattison. 1992. The effects of egg relocation and beach renourishment on the nesting and hatching success of Caretta caretta p. 395-407, in: Broward County Florida, 1991. Proceedings of the 5th Annual National Conference on Beach Preservation Technology. St. Petersburg, Florida. February 12-14, 1992.

*Burney, C.M. and C. Mattison. 1991. Sea Turtle Conservation Project, Broward Co. Florida. 1991 Report. Broward County Erosion Prevention District, Environmental Quality Control Board. Fort Lauderdale, FL. 47 pp.

*Burney, C.M., C. Mattison and L. Fisher. 1991. The relationship of loggerhead nesting patterns and moon phase in Broward County, Florida. Proceedings of the Tenth Annual Workshop on Sea Turtle Conservation and Biology, Hilton Head SC, Feb. 20-24, 1990, p.161-164.

*Mattison, C., C.M. Burney and L. Fisher. 1991. Sea turtle nesting and hatching success in Broward County, Florida, 1989. Proceedings of the Tenth Annual Workshop on Sea Turtle Conservation and Biology, Hilton Head, SC, Feb. 20-24, 1990,p.165-168.

*Burney, C.M. and C. Mattison, 1990. Sea Turtle Conservation Project, Broward Co. Florida. 1990 Report. Broward County Erosion Prevention District, Environmental Quality Control Board. Fort Lauderdale, FL. 46 pp.

Burney, C.M., 1990. Seasonal and diel changes in dissolved and particulate organic matter. Chapter 5, p. 83-116, In: The Biology of Particles in Aquatic Systems, R. Wotton, ed., CRC Press.

*Burney, C.M. and Mattison, C., 1989. Sea Turtle Conservation Project, Broward Co. Florida. 1989 Report. Broward County Erosion Prevention District, Environmental Quality Control Board. Fort Lauderdale, Florida. 58 pp.

*Burney, C.M. and Mattison, C., 1989. Sea Turtle Conservation Project, Broward Co. Florida. 1989 Report. Broward County Erosion Prevention District, Environmental Quality Control Board. Fort Lauderdale, Florida. 58 pp.

Burney, C.M., 1986. Diel dissolved carbohydrate accumulations in coastal waters of South Florida, Bermuda and Oahu. Estuarine, Coastal and Shelf Science., 23, 197-203.

Burney, C.M., 1986. Bacterial utilization of total in-situ dissolved carbohydrate in offshore waters. Limnol. Oceanogr., 31, 427-431.

DODGE, RICHARD E., Ph.D., Professor

Publications

Riegl, Bernhard; Bruckner, Andy; Coles, Steve L.; Renaud, Philip; and. Dodge, Richard E, 2009. The Year in Ecology and Conservation Biology, 2009: Ann. N.Y. Acad. Sci. 1162: 136-186 (2009). doi: 10.1111/j.1749-6632.2009.04493.x _c 2009 New York Academy of Sciences.

Dodge, Richard E.; Birkeland, Charles; Hatzioloa, Marea; Kleypas, Joan;, Palumbi, Stephen; Hoegh-Guldberg, Ove; Van Woesik, Rob; Ogden, John C, Aronson, Richard B; Causey, Billy D.; Staub, Francis. 2008. A Call to Action for Coral Reefs, 10 OCTOBER 2008 VOL 322 SCIENCE www.sciencemag.org

Walker B.K., Riegl B.M., and R.E. Dodge. 2008. Mapping Coral Reef Habitats in Southeast Florida Using a Combined Technique Approach. Journal of Coastal Research, 24(5), 1138-1150.

Riegl B, Dodge RE (2008) (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 1-9

Riegl B, Dodge RE (2008) Introduction: A diversity of oceans, reefs, people, and ideas: a perspective of US coral research. In: Riegl B, Dodge RE (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 1-9.

Riegl B, Purkis SJ, Houk P, Cabrera G, Dodge RE (2008) Geologic setting and geomorphology of coral reefs in the Mariana Islands (Guam and Commonwealth of the Northern Mariana Islands). In: Riegl B, Dodge RE (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 687-714.

Banks KE, Riegl BM, Richards VP, Walker BE, Helmle KP, Jordan LKB, Phipps J, Shivji M, Spieler RE, Dodge RE (2008) The reef tract of continental Southeast Florida (Miami-Dade, Broward, and Palm Beach Countoes, USA). In: Riegl B, Dodge RE (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 125-172.

Jaap, W.C., J.H. Hudson, R.E. Dodge, D. Gilliam, R. Shaul, 2006. Coral reef restoration with case studies from Florida. Pp. 478 - 514 (chapter 16) in I.M. Cote and J.D. Reynolds (editors) Coral Reef Conservation. University of Cambridge Press, Cambridge, UK. ISBN13 978-0-521-85536-5.

Kohler, K.E. and R.E. Dodge, 2006. Visual_HEA: Habitat Equivalency Analysis Software to Calculate Compensatory Restoration following Natural Resource Injury. Proceedings 10th International Coral Reef Symposium, Okinawa, Japan. 1611-1616.

Swart, P.K., A. Szmant, J.W. Porter, R.E. Dodge, J.I. Tougas, and J.R. Southam, 2005. The isotopic composition of respired carbon dioxide in scleractinian corals: Implications for cycling of organic carbon in corals.Geochimica et Cosmochimica Acta, Vol. 69, No. 6, pp. 1495-1509, 2005.

Ryan P. Moyer, Bernhard Riegl, Kenneth Banks, Richard E. Dodge, 2003, Spatial patterns and ecology of benthic communities on a high-latitude South Florida (Broward County, USA) reef system, Coral Reefs 22: 447-464.

Moses, C.S., K.P. Helmle, P.K. Swart, R.E. Dodge, and S.E. Merino (2003) "Pavements of Siderastrea radians on Cape Verde reefs" Coral Reefs 22(4): 506.

Turgeon, D.D., R.G. Asch, B.D. Causey, R.E. Dodge, W. Jaap, K. Banks, J. Delaney, B.D. Keller, R. Spieler, C.A. Matos, J.R. Garcia, E. Diaz, D. Cantanzaro, C.S. Rogers, Z. Hillis-Starr, R. Nemeth, M. Taylor, G.P. Schmahl, M.W. Miller, D.A. Gulko, J.E. Maragos, A.M. Friedlander, C.L. Hunter, R.S. Brainard, P. Craig, R.H. Richmond, G. Davis, J. Starmer, M. Trianni, P. Houk, C.E. Birkeland, A. Edward, Y. Golbuu, J. Gutierrez, N. Ideochong, G. Paulay, A. Tafileichig, and N. Vander Velde. 2002. The State of Coral Reef Ecosystems of the United States and Pacific Freely Associated States: 2002. National Oceanic and Atmospheric Administration / National Ocean Service/National Centers for Coastal Ocean Science. Silver Spring, MD. 265pp.

Helmle, K.P., R.E. Dodge, and R.A. Ketcham, 2002. Skeletal architecture and density banding in Diploria strigosa by x-ray computed tomography. Proceedings of 9th Int Coral Reef Symp. Bali, Indonesia Oct. 23-27 2000, Vol. 1, pp 365-371.

Milon, J.W. and R.E. Dodge. 2001. Applying habitat equivalency analysis for coral reef damage assessment and restoration. Bulletin of Marine Science 69(2): 975-988.

Swart, P.K., G.F. Healy, R.E. Dodge, P. Kramer, J.H. Hudson, R.B.Halley, and M.B. Roblee, 1996. The stable oxygen and carbon isotopic record from a coral growing in Florida Bay: a 160 year record of climatic andanthropogenic influence. Palaeo, Palaeo, Palaeo, 123, 219-237.

Greer, L., P.K. Swart, P.K., G. Hely, R.E. Dodge, D. Rudnick and D. Smith. 1996. Examining high resolution coral sampling techniques to reveal finescale salinity events in Florida Bay. 8th International Coral Reef Symp. Abstract.

Swart, P.K., R.E. Dodge, and H.J. Hudson. A 240 year stable oxygen and carbon isotopic record in a coral from South Florida: implicatons for the prediction of precipitation in southern Florida. Palaios. 121, 362-375.

Swart, P.K., J.J. Leder, A.M. Szmant, and R.E. Dodge, 1996. The origin of variations in the isotopic record of scleractinian corals: II. Carbon. Geochim. Cosmochim. Acta. 60. 2871-2885.

Leder, J.J., P.K. Swart, A.M. Szmant, and R.E. Dodge, 1996. The origin of variations in the isotopic record of scleractinian corals: I.Oxygen. Geochim. Cosmochim. Acta. 60. 2857-2870.

Baca,B., R. Dodge, S. Snedaker, A. Knap, and T. Sleeter, 1996. The effects of crude oil and dispersed oil on tropical ecosystems: long-term seagreass, mangrove, and coral studies. Oceans 96 MTS/IEEE Conference 23-26 Sept., 1996, Ft. Lauderdale, FL, Abstract

Dodge, R.E., A.H. Knap, B.J. Baca, S.C. Snedaker, T.D. Sleeter, 1996. The effects of oil and oil dispersants on tropical ecosystems: A 10 year Update. 8th International Coral Reef Symposium, Panama City, Panama, June,1996.

Anderegg, D, R.E. Dodge, P.K. Swart, L. Fisher,1996. Barium chronologies from two southeast florida reef coral species - an index of nutrient enhancement. 8th International Coral Reef Symposium, Panama City, Panama, June, 1996.

Dodge, R.E., B.J. Baca, A.H. Knap, S.C. Snedaker, and T.D. Sleeter. 1995. The effects of oil and chemically dispersed oil in tropical ecosystems: 10 years of monitoring experimental sites. Marine Spill Response Corporation, Washington, D.C. MSRC Technical Report Series 95-014, 82 pp +app.

Dodge, R.E., W. Goldberg, C. Messing, S. Hess., 1995. Final Report: biological monitoring of the Hollywood-Hallandale Beach renourishment, Technical Report 95-03, Broward County Dept. Natural Resources Protection.,159 pp.

Swart,P.K., G. Healy, R.E. Dodge, P. Kramer, H. Hudson, R. Halley,and M. Roblee, 1995. The stable oxygen and carbon isotopic record from a coral growing in Florida Bay: a 160 year record of climatic and antropogenic influence. Accepted Paleo, Paleo. Paleo.

Anderegg, D., R.E. Dodge, P.K. Swart, L. Fisher, 1995. Barium chronologies from two southeast Florida reef coral species - an index of nutrient enhancement. SEPM meeting, presentation and abstract, August, 1995,St. Petersburg, FL.

Dodge, R.E., A.H. Knap, B.J. Baca, S.D. Snedaker, and T.D. Sleeter, 1995. The effects of oil and oil dipersants on tropical ecosystems: a 10 year update. SEPM meeting, presentation and abstract, August, 1995, St. Petersburg,FL.

White,K, Swart, P, Dodge, R, and Enfield, D., 1995. Climate records in corals from the Gulf of Guinea: Proxy indicators of drought anomalies in the Sahel region of West Africa. SEPM meeting, presentation and abstract, August,1995, St. Petersburg, FL.

Knap, A.H., R.E. Dodge, B.A. Baca, and T.D. Sleeter, 1994. The effects of oil and oil dispersants in tropical ecosystems: An Update. In International Oil Spill Research and Development Forum, London.

Hardy, J.T., F.E. Hoge, J.K. Yungel, and R.E. Dodge, 1992. Remote detection of coral 'bleaching' using pulsed-laser fluorescence spectroscopy. Mar. Ecol. Prog. Series 88: 274-255.

Dodge, R.E., R. Garcia, A.M. Szmant, P.K. Swart, A. Forrester, and J.J. Leder, 1992. Skeletal structural basis of density banding in the reef coral Montastrea annularis. Abstract and paper presented at Proc. 7th Inc. Coral Reef Symp. Guam. June, 1992.

Fisher, L.E., R.E. Dodge, C. Messing, W.M. Goldberg, and S. Hess, 1992. The First Renourishment at Hollywood and Hallandale (Florida) Beaches: Monitoring of sediment fallout, coral communities, and microinfauna: preliminary results. Talk and paper presented at Florida Shore and Beach Preservation Association, Tampa, Feb., 1992.

Dodge, R.E., C. Messing, W. Goldberg, S. Hess, 1991. First Post Construction Report of Biological Monitoring: Hollywood-Hallandale 1991 Project.

Dodge, R.E., S. Hess, and C. Messing, 1991. Final Report: Biological monitoring of the John U. Lloyd Beach Renourishment: 1989. Broward County Board of County Commissioners Erosion Prevention District of the Office of Natural Resource Protection. 62pp.

*Kleppel, G.S., C. Reese, and R.E. Dodge, 1989. Changes in pigmentations in stony corals associated with bleaching. Limnol & Oceanogr., 1989, 34: 1331-1335.

Goldberg, W. and R.E. Dodge, 1989. Biological Evaluation of Vero Beach environments, City of Vero Beach Beach Restoration Project Assessment Report, Coastal Planning & Engineering, Jan., 1989, 96 pp.

Dodge, R.E. and L. Fisher, 1988. The Growth Rate of Stony Corals of Broward County, Florida: Comparison With Past Beach Renourishment Projects, talk and paper presented at: Conference on Beach Preservation Technology, 1988: Problems and Advancements in Beach Nourishment, March 23-25, Gainesville, Florida.

Investigations in Coastal systems (TROPICS): the effects of an dispersed and whole Prudhoe Bay crude oil on mangroves, seagrass, and corals in Panama, API Pub. No. 4480 American Petroleum Institute, Health and Environmental Science Dept. Washington, D.C.

Ballou, T.G., R.E. Dodge, A.H. Knap, S.H. Hess, 1987. Tropical Oil Pollution

Ballou, T.G., R.E. Dodge, S.C. Hess, A.H. Knap, and T. D. Sleeter, 1987. Tropical oil pollution investigations in coastal systems (TROPICS) -- final report to American Petroleum Institute, Research Planning Institute, Inc., Columbia, SC, 218 pp.

Dodge, R.E., 1987. "Growth rate of stony corals of Broward County, Florida: Effects from Post beach renourishment projects." Report to Broward County Erosion Prevention District, Environmental Quality Control Board, 73pp.

Benninger, L.K. and R.E. Dodge, 1986. Fallout plutonium and natural radionuclides in annual bands of the coral Montastrea annularis, St. Croix, U.S. Virgin Islands, Geochim. Cosmochim Acta, 50, 2785-2797.

Wyers, S.C., H.R. Frith, R.E. Dodge, S.R. Smith, A.H. Knap, and T.D. Sleeter, 1986. Behavioural effects of chemically dispersed oil and subsequent recovery in Diploria strigosa (Dana), Marine Ecology P.S.Z.N., 7, 23-42.

Dodge, R.E. and A. Szmant-Froelich, 1985. "Effects of drilling fluids on reef-building corals: A review", Abstract and talk presented at 3rd Int. Ocean Disposal Symp. WHOI Oct, 1981, pp 152-153, Published in: Wastes in the Ocean, Volume 4: Energy Wastes in the Ocean, eds., I.W. Duedall, D.R. Kester, and P.K. Park, John Wiley & Sons, Inc., Chap. 13, pp 341-364.

Ballou, T.G., M.S. Brown, R.E. Dodge, C.D. Getter, A.H. Knap, and T.D. Sleeter, 1985. Research Planning Institute, Inc., Tropical Oil Pollution Investigation In Coastal Systems (TROPICS), a technical status report. RPI/R/85- 14, Columbia, SC, 128pp.

Dodge, R.E., A.H. Knap, S.C. Wyers, H.R. Frith, and S.R. Smith, 1985. The effect of dispersed oil on the calcification rate of the reef-building coral Diploria strigosa. Fifth International Coral Reef Symp, Tahiti, May-June, 1985, 6, 453-457.

Dodge, R.E., 1985. "Jan., 1985 Assessment of Vieques Coral Reefs", report to Ecology and Environment, Inc. for Environmental Impact Statement Update.

Dodge, R.E., S. Wyers, H.R. Frith, A.H. Knap, C. Cook, R. Smith, and T.D. Sleeter, 1984. Coral calcification rates by the buoyant weight technique: effects of alizarin staining. J. Exp. Mar. Biol. Ecol. 75, 217-232.

Dodge, R.E., R.G. Fairbanks, L.K. Benninger, and F. Maurrasse. 1983. Pleistocene sea levels from raised coral reefs of Haiti. Science, 219, 1423-1425.

Fairbanks, R.G., and R.E. Dodge, 1979. Annual periodicity of the skeletal oxygen and carbon stable isotope composition in the coral Montastrea annularis. Geochim. Cosmochim. Acta, 43, 1009-1020.

Dodge, R.E., R.C. Aller and J. Thomson, 1974. Coral growth related to resuspension of bottom sediments. Nature, 247, 574-577.

Abstracts

Dodge, R.E., Fisher, L, K. Banks, D. Stout, and W. Jaap, 1998. Florida coral reef damage from nuclear submarine grounding and proposed restoration.NOAA Habitat Restoration Conference, Charleston, SC, Jan. 1998. Abstract and Poster.

Dodge, R.E. and P.K. Swart, 1998. Sclerosponges have Annual GrowthBands. Presentation at International Sclersponge Meeting, Miami, March, 1998.

Dodge, R.E., D. Anderegg, and P.K. Swart, 1997. Ba in corals from Florida Bay , a salinity indicator. Paleoecology of Florida Bay Meeting Abstracts with Programs.

Greer, L., P.K. Swart, and R.E. Dodge, 1996. Small corals in Florida Bay:recorders of environmental change, Paleoecology of Florida Bay Meeting Abstracts with Programs.

Fisher, L., K. Banks, D. Stout, R.E. Dodge, and W. Jaap, 1997. Floridacoral reef damage from nuclear submarine grounding and proposed restoration.Society for Ecological Restoration, 9^th Int. Conf., No. 12, 1997,Ft. Lauderdale, Abstract. p131.

Greer, L., P.K. Swart, and R.E. Dodge, 1996. A comparison of modern and Holocene coral growth rates from the Dominican Republic. Geol. Soc. Of America Abstracts with Programs, Vol 28, 7, 1996.

Baca, B.J., S.C. Snedaker, R.E. Dodge, A. Knap, and T.D. Sleeter. 1996. The effects of crude oil and dispensed oil on tropical ecosystems: long-term seagrass, mangrove and coral studies. In Oceans 96 MTS/IEEE, Ft. Lauderdale, Florida pp. 469-486.

Dodge, R.E., A. Knap, B.J. Baca, S.C. Snedaker, and T.D. Sleeter. 1996. The effects of oil and oil dispersants on tropical ecosystems: a 10 year update. Proc. 8th Intl. Coral Reef Symp., Panama City, Panama.

Dodge, R.E., A.M. Szmant, E. Weil, P.K. Swart, K. Helmle, and J.W.Porter, 1996. Seasonal Extension, Density, mass and calcification of Montastreaea faveolata, 8th International Coral Reef Symposium, Panama City, Panama, June, 1996.

DOUGAN, JANE, Coordinator of Distance Learning

Publications

Dougan, J. May 2003. Water in the arts pp. 52-57 in: Volume 1: Water Sciences Encyclopedia, Macmillan Reference USA.

Dougan J. May 2003. Water in Religions. pp. 41-42 in: Volume 4. Water: Science and Issues. Macmillan Reference USA.

Dougan, J. September 2002. Experiences with international environmental distance learning. Water Resources IMPACT, American Water Resources Association. Vol. 4, No. 5, pp. 10-14.

Dougan, J., 2001. Distance learning and environment. In: Encyclopedia of Global Environmental Change, Vol. 5., John Wiley and Sons, UK.

DRAGOJLOVIC, VELJKO, Ph.D., Assistant Professor

Publications

Dragojlovic, V, S. Bajc, A. Ambles and D. Vitorovic. 2005. Ether and ester moieties in Messel shale kerogen examined by hydrolysis/ruthenium tetroxide oxidation /hydrolysis. Organic Geochemistry , 36, 1-12.

Cash, D., A. Combs and V. Dragojlovic. 2004. Cobalt-catalyzed photolytic methoxycarbonylation of bromoalkanes in the presence of a Lewis acid. Tetrahedron Lett. 45 (6), 1143-1145.

Duarte, R., J. T. Nielsen, and V. Dragojlovic. 2004. Isolation of Oil of Nutmeg and Trimyristin from Nutmeg. Chem. Educator, 9 (6), 366-369.

Duarte, R., J. T. Nielsen, and V. Dragojlovic. 2004. Synthesis of Chemiluminescent Esters: A Combinatorial Synthesis Experiment for Organic Chemistry Students. J. of Chem. Educ., 81, 1010-1015.

Cornely, J., L. M. Su Ham, D. E. Meade and V. Dragojlovic. 2003. Dimethyl carbonate-water: an environmentally friendly solvent system for ruthenium tetroxide oxidations. Green Chem., 5, 34-37.

Nielsen, J.T., R. Duarte and V. Dragojlovic. 2003. Oxidation of an Unknown Cycloalkene, Cycloalkanol, or Cycloalkanone to a Dicarboxylic Acid: Discovery Oriented Experiment for Organic Chemistry Students. Chem. Educator, 8, 241-243.

Barrera, N.M., J. L. McCarty and V. Dragojlovic. 2002. Effects of concentration on Hexaaquacobalt(II)/Tetrachlorocobalt(II) Equilibrium. A Discovery-Oriented Experiment for Chemistry Students. Chem. Educator, 7, 142-145.

Dragojlovic, V., D. Gao and Y. L. Chow. 2001. Multigram Scale Cobalt Catalyzed Photochemical Methoxycarbonylation of Alkenes. J. Mol. Cat. A: Chemical, 171: 1-2, 43-51.

McCarty, J.L. and V. Dragojlovic. 2001. Demonstration of Allotropic Modifications of Sulfur and Comparison with Io’s Surface. JCST, 31, 265-267.

Dragojlovic, V.. 2001. A Method to Draw Cyclohexane Ring and its Substituents. J. of Chem. Educ., 78, 923.

Dragojlovic, V.. 2000. Synthesis of a Highly Functionalized Triquinane: Studies Toward a Total Synthesis of Subergorgic Acid and its Analogues. Molecules, 674-698.

Dragojlovic, V.. 1999. Preparation of Cyclopentenones by Benzeneseleninic Anhydride Oxidation of Cyclopentanones. J. Chem. Res., 256-257.

Dragojlovic, V.. 1999. Using Overhead Projector to Simulate X-ray Diffraction Experiment. J. Chem. Educ., 76, 1240-1241.

Dragojlovic, V.. 1999. Flame Tests Using Improvised Alcohol Burners. J. Chem. Educ., 76, 929-930.

Chow, Y.L., Y. J. Huang and V. Dragojlovic. 1995. Preparation of Lactones from Alkenyl-Carbinols. Can. J. Chem., 73, 740-742.

Dragojlovic, V., A. Ambles and D. Vitorovic. 1993. Characterization of Ester and Ether Moieties in the Kerogen from Aleksinac Oil Shale by Hydrolysis and Ruthenium Tetroxide Oxidation. J. Serb. Chem. Soc., 58, 25-38.

Vitorovic, D. and V. Dragojlovic. 1990. Test of the Validity of Some Kerogen Models Based on Oxidative Degradation. Org. Geochemistry, 15, 313-319.

FEINGOLD, JOSHUA, Ph.D., Assistant Professor

Publications

Glynn, P.W., S.B. Colley, J.L. Mat\351, J. Cort\351s, H.M. Guzm\341n, R.L. Bailey, J.S. Feingold & I.C. Enochs. 2008. Reproductive ecology of the azooxanthellate coral Tubastraea coccinea Lesson 1829 in the Eastern Pacific: Costa Rica, Panam\341, and Gal\341pagos Islands (Ecuador). V. Dendrophylliidae. Marine Biology, 153: 529-544.

Richardson, L.L., R.B. Aronson, W.M. Goldberg, G.W. Smith, K.B. Ritchie, K.G. Kuta, J.S. Feingold, J.C. Halas, S.L. Miller, 1998. Florida's mystery coral-killer identified, Nature, 392: 557-558.

Feingold, J. 1998. Nueva especie de mariposa nocturna casi introducida a Galápagos. La Garua, 34:38.

Feingold, J. In Review. A description of a free-living coral community: GalápagosIslands, Ecuador. In: Galápagos Marine Ecology and Evolution,Mathew J. James (ed.).

Reaka-Kudla, M.L., J.S. Feingold and P.W. Glynn, 1996. Experimental studies of rapid bioerosion of coral reefs in the Galápagos Islands.Coral Reefs, 15: 101-107.

Feingold, J., 1996. Coral survivors of the 1982-83 El Niño - Southern Oscillation, Galápagos Islands, Ecuador. Coral Reefs,15: 108.

Feingold, J., 1995. Effects of elevated water temperature on coral bleaching and survival during El Niño disturbance events. Ph.D. dissertation, University of Miami, Coral Gables, Florida, 236 pp.

Glynn, P.W., S.B. Colley, C.M. Eakin, D.B. Smith, J. Cortes, N.J. Gassman, H.M. Guzman, J.B. Del Rosario & J.S. Feingold. 1994. Reef coral reproduction in the eastern Pacific: Costa Rica, Panama, and the Galápagos Islands (Ecuador). II. Poritidae. Marine Biology, 118: 191-208.

Eakin, C. M., J.S. Feingold & P.W. Glynn. 1994. Oil refinery impacts on coral reef communities in Aruba, N.A. In: Proceedings of the Colloquium on Global Aspects of Coral Reefs: Health, Hazards, and History, 1993. Rosenstiel School of Marine and Atmospheric Science, University of Miami, pp. 139-145.

Brewer, R.H. & J.S. Feingold. 1991. The effect of temperature on the benthic stages of Cyanea (Cnidaria, Scyphozoa), and their seasonal distribution in the Niantic River Estuary, Connecticut. Journal ofExperimental Marine Biology and Ecology, 152: 49-60.

Glynn, P.W. & J.S. Feingold. 1992. Hydrocoral species not extinct. Science, 257: 1845.

Feingold, J.S. 1988. Ecological studies of a cyanobacterial infection on the Caribbean sea plume Pseudopterogorgia acerosa (Coelenterata:Octocorallia). Proceedings of the Sixth International Coral Reef Symposium, Townesville, Australia, 3: 157-162.

Feingold, J.S.. 1987. Ecological studies of a cyanobacterial infection on the Caribbean sea plume Pseudopterogorgia acerosa (Pallas) (Coelenterata:Octocorallia). M.S. thesis, University of Miami, Coral Gables, Florida,61pp.

Abstracts

Feingold, J.S.. 1993. Community structure of a free-living coral assemblage, Galápagos Islands, Ecuador. Proceedings of the Seventh International Coral Reef Symposium, Guam, 1992, 1: 580.

GILLIAM, DAVID S., Ph.D., Assistant Professor

Publications

Monty, J.A., D.S Gilliam, K. Banks, D. Stout, and R.E. Dodge. 2005. Coral of Opportunity Survivorship and the Use of Coral Nurseries in Coral Reef Restoration. Proc. 10th International Coral Reef Symp., Okinawa, Japan. In press.

Fahy, E.G., T.P. Quinn, D.P. Fahy, R.E. Dodge, R.E. Spieler, and D.S. Gilliam. 2005. Growth and Survivorship of Meandrina meandrites and Montastrea cavernosa Coral Core Transplants and Effectiveness of Plugging Core Holes in Transplant Donor Colonies. Proc. 10th International Coral Reef Symp., Okinawa, Japan. In press.

Feingold, J.S., S.L. Thornton, K.W. Banks, N.J. Gasman, D.S. Gilliam, P. Fletcher, and C. Avila. 2003. A rapid assessment of coral reefs near Hopetown, Abaco Islands, Bahamas (stony corals and algae). Pp. 58-75 in J.C. (ed), Status of Coral Reefs in the western Atlantic: results of initial Surveys, Atlantic and Gulf Rapid Reef Assessment (AGRRA) Program. Atoll Research Bulletin 496.

Thornton, S.L., D.S. Gilliam, R.E. Dodge, R.E. Fergen, and P. Cooke. 2002. Success and growth of corals transplanted to cement armor mat tiles in Southeast Florida: Implications for reef restoration. Proc. 9th International Coral Reef Symp., Bali, Indonesia Vol. 1. pp 955-962.

Sherman, R.L., D.S. Gilliam and R.E. Spieler. 2001. Site-dependent differences in artificial reef function: Implications for coral reef restoration. Bulletin of Marine Science 69(2): 1053-1056.

Spieler, R.E., D.S. Gilliam and R.L. Sherman. 2001. Artificial substrate and coral reef restoration: What do we need to know to know what we need. Bulletin of Marine Science 69(2): 1013-1030.

GILMAN, MIKHAIL, Ph.D., Research Scientist

Publications

A. Soloviev, M. Gilman, K. Young, S. Brusch, and S. Lehner. Sonar Measurements in Ship Wakes Simultaneous With TerraSAR-X Overpasses. IEEE Transactions on Geoscience and Remote Sensing - Special Issue on TerraSAR-X, 2009 (accepted, Manuscript ID: TGRS-2009-00145).

M.A.Gilman, S.Yu, Sadov, A.S.Shamaev., and S.I.Shamaev. Radar Sensing of Sea Surface: Some Problems of Numerical Simultaion of Scattering of Electromagnetic Waves, review, Radiotechnics and Electronics, v. 45, sp. issue no. 2, 2000, pp. 229-246.

M.A.Gilman. Bispectrum and Analysis of the Statistics of Electromagnetic Waves Backscattered by Sea Surface}. Journal of Computer and System Sciences International, 1997, v.36, No.6, pp. 972-980.

M.A.Gilman, A.G.Mikheev, T.L.Tkachenko. The Two-scale Model and Other Methods For the Approximate Solution of the Problem of Diffraction by Rough Surfaces. Journal of Computational Mathematics and Mathematical Physics, 1996, v.36, No.10, pp. 1429-1442.

R. Bingham, V. D. Shapiro, V. N. Tsytovich, U. de Angelis, M. Gilman and V. I. Shevchenko, Theory of wave activity occurring in the AMPTE artificial comet, Physics of Fluids B, 1991, v.3, No.7, pp. 1728-1738.

M. Gilman and A. Khrabrov. Nonlinear Dynamics of the Cyclotron Instability of a Fast Ion Beam. Sov. J. of Plasma Physics, 1987, v. 13, no. 12, pp. 824-828.

HELMLE, KEVIN, Ph.D., Research Scientist

Publications

Banks K.W., B.M. Riegl, V.P. Richards, B.K. Walker, K.P. Helmle, L.K.B. Jordan, M.S. Shivji, R.E. Spieler, R.E. Dodge (2008). The reef tract of continental southeast Florida (Miami-Dade, Broward and Palm Beach Counties, USA). in: Riegl B, Dodge RE (eds) Coral reefs of the USA, Springer, Dordrecht, pp 173-218.

Smith, J.M., T.M. Quinn, K.P. Helmle, and R.B. Halley (2006). Reproducibility of geochemical and climatic signals in the Atlantic coral Montastraea faveolata. Paleoceanography, 21, PA1010, doi:10.1029/2005PA001187.

Eakin, C.M., P.K. Swart, T.M. Quinn, K.P. Helmle, J.M. Smith, and R.E. Dodge (2006). Application of Paleoclimatology to Coral Reef Monitoring and Management. Proceedings of 10th Int Coral Reef Symp. Okinawa, Japan June 28-July 2 2004, pp 588-596.

Moses, C.S., K.P. Helmle, P.K. Swart, R.E. Dodge, and S.E. Merino (2003). Pavements of Siderastrea radians on Cape Verde reefs. Coral Reefs 22(4): 506.

Helmle, K.P., R.E. Dodge, and R.A. Ketcham (2002). Skeletal architecture and density banding in Diploria strigosa by X-ray computed tomography. Proceedings of 9th Int Coral Reef Symp. Bali, Indonesia Oct. 23-27 2000, Vol. 1, pp 365-371.

HIRONS, AMY C., Ph.D., Research Scientist

Publications

Sigler MF, LB Hulbert, CR Lunsford, N Thompson, K Burek, AC Hirons (2006) Diet of Pacific sleeper sharks, a potential Steller sea lion predator, in the north-east Pacific Ocean. Journal of Fish Biology 69: 392-405.

Wade, PR, AC Hirons, MM Krahn, CO Matkin, JW Durban, DP Herman, DG Burrows (2006) Investigations into dietary specialization of Killer Whales (Orcinus orca) in the Bering Sea and Aleutian Islands. North Pacific Research Board Final Report 0411/0535, 77 pages.

Hirons AC, Wynne KM (2005) Seasonal forage patterns in Steller sea lions. Final report to NOAA Project NA17FX1408.

Hirons AC, Schell DM, Finney BP (2001) Temporal records of d13C and d15N in north Pacific pinnipeds: inferences regarding environmental change and diet. Oecologia 129:591-601.

Hirons AC, Schell DM, St. Aubin DJ. (2001) Vibrissae growth rates of harbor seals (Phoca vitulina) and Steller sea lions (Eumetopias jubatus). Canadian Journal of Zoology. 79:1053-1061.

HOCHBERG, ERIC J., Ph.D., Assistant Professor

Publications

Hogrefe KR, Wright DJ, Hochberg EJ (2008) Derivation and integration of shallow-water bathymetry: implications for coastal terrain modeling and subsequent analyses. Marine Geodesy. 31: 299-317

Hochberg EJ, Atkinson MJ (2008) Coral reef benthic productivity based on optical absorptance and light-use efficiency. Coral Reefs. 27: 49-59.

Denevi BW, Lucey PG, Hochberg EJ, Steutel D (2007) Near-infrared optical constants of pyroxene as a function of iron and calcium content. Journal of Geophysical Research-Planets. 112: E05009.

Conger CL, Hochberg EJ, Fletcher CH, Atkinson MJ (2006) Decorrelating remote sensing color bands from bathymetry in optically shallow waters. IEEE Transactions on Geoscience and Remote Sensing. 44: 1655-1660.

Hochberg EJ, Apprill A, Atkinson MJ, Bidigare RR (2006) Bio-optical modeling of photosynthetic pigments in corals. Coral Reefs. 25: 99-109.

Andréfouët S, Payri C, Hochberg EJ, Hu CM, Atkinson MJ, Muller-Karger FE (2004) Use of in situ and airborne reflectance for scaling-up spectral discrimination of coral reef macroalgae from species to communities. Marine Ecology Progress Series. 283: 161-177.

Hochberg EJ, Atkinson MJ, Apprill A, Andréfouët S (2004) Spectral reflectance of coral. Coral Reefs. 23: 84-95.

Mumby PJ, Skirving W, Strong A, Hardy JT, LeDrew E, Hochberg EJ, Stumpf RP, David LT (2004) Remote sensing of coral reefs and their physical environment. Marine Pollution Bulletin. 48: 219-228.

Andréfouët S, Kramer P, Torres-Pulliza D, Joyce KE, Hochberg EJ, Garza-Perez R, Mumby PJ, Riegl B, Yamano H, White WH, Zubia M, Brock JC, Phinn SR, Naseer A, Hatcher BG, Muller-Karger FE (2003) Multi-site evaluation of IKONOS data for classification of tropical coral reef environments. Remote Sensing of Environment. 88: 128-143.

Hochberg EJ, Andréfouët S, Tyler MR (2003) Sea surface correction of high spatial resolution Ikonos images to improve bottom mapping in near-shore environments. IEEE Transactions on Geoscience and Remote Sensing. 41: 1724-1729.

Andréfouët S, Hochberg EJ, Payri C, Atkinson MJ, Muller-Karger FE, Ripley H (2003) Multi-scale remote sensing of microbial mats in an atoll environment. International Journal of Remote Sensing. 24: 2661-2682.

Hochberg EJ, Atkinson MJ, Andréfouët S (2003) Spectral reflectance of coral reef bottom-types worldwide and implications for coral reef remote sensing. Remote Sensing of Environment. 85: 159-173.

Hochberg EJ, Atkinson MJ (2003) Capabilities of remote sensors to classify coral, algae and sand as pure and mixed spectra. Remote Sensing of Environment. 85: 174-189.

Andréfouët S, Payri C, Hochberg EJ, Che LM, Atkinson MJ (2003) Airborne hyperspectral detection of microbial mat pigmentation in Rangiroa atoll (French Polynesia). Limnology and Oceanography. 48: 426-430.

Andréfouët S, Muller-Karger FE, Hochberg EJ, Hu CM, Carder KL (2001) Change detection in shallow coral reef environments using Landsat 7 ETM+ data. Remote Sensing of Environment. 78: 150-162.

Hochberg EJ, Atkinson MJ (2000) Spectral discrimination of coral reef benthic communities. Coral Reefs. 19: 164-171.

Atkinson MJ, Barnett H, Aceves H, Langdon C, Carpenter SJ, McConnaughey T, Hochberg EJ, Smith M, Marino BDV (1999) The Biosphere 2 coral reef biome. Ecological Engineering. 13: 147-171.

KEITH, EDWARD O., Ph.D., Associate Professor

Publications

Keith, E.O. 2003. Laboratory experiments in biochemistry, 2nd Edition. Kendall/Hunt Publishing Company, Dubuque, IA, USA. 137 pp.

Keith, E.O., S. Cruz, L. Gedeon, K. Latif, S. Patel, S. Qadeer, M. Sabogal, M. Zaman, and L.E. Janoff. 2003. Lysozyme adhesion to the four major types of contact lens materials. Am. Biotechnol. Lab. 21(2):60-61.

Ortega-Argueta, A., E. Portilla-Ochoa, and E. O. Keith. 2003. Manatee recovery plan for wetlands of Alvarado, Veracruz, Mexico. Annual Report to the Wildlife Trust, Ref. #02-03-099. 32 pp.

Keith, E.O. 2002. "Boater Manatee Awareness System", Final Report to the Manatee Avoidance Technology Program, Contract No. FWC01-02-14, Florida Fish & Wildlife Conservation Commission, Florida Marine Research Institute, 100 8th Avenue, SE, St. Petersburg, Fl 33701

Keith, E.O., M. Boltz, R. Gadh, R. Ghorsriz, D. Mangatt, and L. Janoff. (2001). Adhesion of tear proteins to contact lenses and vials. Biotechnol. Appl. Biochem. 34:5-12.

Keith, E.O., and Ortiz, C.L. (1989). Glucose kinetics in neonatal elephant seals during postweaning aphagia. Marine Mammal Sci. 5(2):99-115.

Keith, E.O., Condit, R.S., and LeBoeuf, B.J. (1984). California sea lions breeding at Año Nuevo Island. J. Mammal. 65(4):695.

Keith, E.O., Ellis, J.E., Phillips, R.W., Dyer, M.I., and Ward, G.M. (1981). Some aspects of urea metabolism in North American bison. Acta Theriol. 26(14):257?268.

Keith, E.O., Ellis, J.E., Phillips, R.W. and Benjamin, M.M. (1978). Serologic and hematologic values of bison from Colorado. J. Wildlife Dis. 14(3):493-500.

Keith, E.O. (2001). Survey of Marine Mammals. Kendall/Hunt Publishing Company, Dubuque, IA, U.S.A. 225 pp.

Keith, E.O. (1985). Blood Glucose homeostasis in man: Fasting, diabetes and comparisons with other mammals. Pages D1?1 to D1?12. In B.A. Coyle and D.P. Martinez (Eds.) Current topics in Chiropractic: Reviews of the Literature. Palmer College of Chiropractic?West, 1095 Dunford Way, Sunnyvale, CA 94807

Technical Reports

Keith, E.O. (2008). Critical review of the literature on marine mammal population modeling. Final report contract JIP 22-07-19 from the International Association of Oil and Gas Producers E&P Sound and Marine Life Joint Industry Programme. 55 pp.

Keith, E.O. and N. O'Brien. (2008). An Analysis of Kogia Stranding Data Collected by the Southeast Region Marine Mammal Stranding Network. Final Report, NOAA Prescott Grant Program, Award #NA06NMF4390155. 19 pp.

Keith, E.O., and L.V. Aragones. (2007). Ecology and conservation of cetaceans in Tañon Strait, Philippines. Project Year-End Report (2006) for the SeaWorld Busch Gardens Conservation Fund. 16 pp.

Keith, E.O. (2006). Biological Data Report, Cruise #0414, Visual and Acoustic Surveys of Cetaceans in the Bahamas, 18-24 November 2003. Submitted to the Florida Institute of Oceanography. 9 pp

Keith, E.O. (2005). Final cruise report, Cruise #SC0525. Acoustic and Genetic Surveys of Cetaceans in the Tongue of the Ocean, Bahamas, 5-10 May 2005. Florida Institute of Oceanography. 14 pp.

Keith, E.O. (2005). Development of an underwater infrared camera to detect manatees. Final Report to the Manatee Avoidance Technology Program, Contract No. FWC 03/04-28, Florida Fish and Wildlife Conservation Commission, Fish and Wildlife Research Institute, St. Petersburg, FL. 22 pp.

Aragones, L.A., and Keith, E.O. (2004). Ecology and conservation of cetaceans in the southern Tañon Strait area - Part I (Conservation). Report to the Governments of the province of Negros Oriental and the city of Bais, Philippines. 65 pp.

Keith, E.O. (2004). Final cruise report, Cruise #0414. Visual and Acoustic Surveys of Cetaceans in the Bahamas, 18-24 November 2003. Florida Institute of Oceanography, St. Petersburg, FL. 18 pp.

Ortega-Argueta, A., E. Portilla-Ochoa, and E. O. Keith. (2003). Manatee recovery plan for wetlands of Alvarado, Veracruz, Mexico. Annual Report to the Wildlife Trust, Ref. #02-03-099. 32 pp.

Keith, E.O. (2002). Boater Manatee Awareness System, Final Report to the Manatee Avoidance Technology Program, Contract No. FWC01-02-14, Florida Fish & Wildlife Conservation Commission, Florida Marine Research Institute, St. Petersburg, FL.

Ortega-Argueta, A., E. Portilla-Ochoa, and E. O. Keith. (2002). Manatee recovery plans for wetlands of Alvarado, Veracruz, Mexico. Final Report to the Save the Manatee Club, Maitland, FL. 35 pp.

Abstracts

Keith, E.O., N. Chandrasekaran, S. Desai, D. Solanki, and A. Janoff. (2009). Adhesion of lysozyme and transferrin to Omafilcon A contact lenses. Annual Meeting of the Federation of American Societies for Experimental Biology, 18-22 April 2009, New Orleans, LA.

Keith,E.O., E. Portilla-Ochoa, A. Ortega-Argueta, B.Cortina-Julio, C. Contreras-Torres and J. Hernandez-Montero. (2009) . Status and recovery of the Antillean manatee in the Alvarado Lagoon System, Veracruz Mexico. 2009 International Sirenian Conservation Conference, 23-24 March 2009, Atlanta, GA. Abstract published in Sirenews - Newsletter of the IUCN Sirenia Specialist Group 41:18.

Stronach, R., L.V. Aragones, E.O. Keith and C. Burney. (2009). Abundance and distribution of spinner dolphins (Stenella longirostris) in the southern Tañon Strait, Philippines. Southeast and Mid-Atlantic Marine Mammal Symposium (SEAMAMMS), 3-5 April 2009, Wilmington, NC.

Cordero, V.U., E.O. Keith, J.V. Lopez, and D.K. Odell. (2009). An assessment of oceanographic correlates with Kogia strandings in Florida. Southeast and Mid-Atlantic Marine Mammal Symposium (SEAMAMMS), 3-5 April 2009, Wilmington, NC.

Young, K., and E.O. Keith. (2009). Identification and Estimation of Sensitive Life History Parameters for Cetaceans in Response to Acoustic Disturbances with Implications for Conservation . Southeast and Mid-Atlantic Marine Mammal Symposium (SEAMAMMS), 3-5 April 2009, Wilmington, NC.

Keith, E.O. (2008). Critical review of the literature on marine mammal population modeling. Joint Industry Programme on Exploration and Production Sound and Marine Life, Programme Review Meeting 28-30 October 2008, Houston, TX.

Keith, E.O. (2008). Conserving Sirenian biodiversity in Mesoamerica. Paper presented at the 2nd International Biodiversity Conference, 29 July - 3 August 2008, Baños, Ecuador.

Arias-del-Razo, A., V. Labrada-Martagon, Marta Romano, R. A. Valdez, and E.O. Keith. (2008). Respuesta adrenal de crías de lobo marino de California (Zalophus californianus californianus) capturadas en la colonia turística Los Islotes, B.C.S., Mexico. XXI Reunión Internacional Sobre el Estudio de los Mamíferos Marinos, 18-22 May 2008, Ensenada, B.C.S., Mexico.

O'Brien, N.M.K., E.O. Keith, and D.K. Odell. (2008). Environmental correlates with Kogia strandings from the southeastern United States. Florida Marine Mammal Health Conference III, 22-25April 2008, St. Augustine Beach, FL.

Moore, K.M., and E.O. Keith. (2008). Immunosuppression Cascade in the Florida Manatee (Trichechus manatus latirostris). Florida Marine Mammal Health Conference III, 22-25April 2008, St. Augustine Beach, FL.

O'Brien, N.M.K., E.O. Keith, and D.K. Odell. (2008). An analysis of Kogia stranding data from the southeastern United States. Southeast and Mid-Atlantic Marine Mammal Symposium (SEAMAMMS), 28-30 March 2008, Charleston, SC.

Keith, E.O., and J.L. Guentzel. (2008). Mercury transport and bioaccumulation in the Alvarado Lagoon System, Veracruz State, Mexico. 2008 Ocean Sciences Meeting , 2-7 March 2008, Orlando, FL. Portilla-Ochoa, E., A. Ortega-Argueta, B. Cortina-Julio, C. Contreras-Torres, J. Hernández-Montero, and E.O. Keith. (2007). Status and recovery of the Antillean manatee (Trichechus manatus manatus) in the Alvarado Lagoon System, Veracruz, Mexico. Conservation Management of Sirenians In Developing Countries and Indigenous Communities, 27 November 2007, Cape Town, South Africa. Abstract published in Sirenews - Newsletter of the IUCN Sirenia Specialist Group 49:8.

Aragones, L., A. Amor, R. Stronach, and E.O. Keith. (2007). Site fidelity and surface behavior of small cetaceans in southern Tañon Strait, Philippines. 17th Biennial Conference on the Biology of Marine Mammals, 29 Nov. - 3 Dec. 2007, Cape Town, South Africa.

Bills, M., E.O. Keith, and L.P. Garrison. (2007). Temporal and spatial distribution of the Atlantic bottlenose dolphin, Tursiops truncatus, along the Southeast Coast of the United States. 17th Biennial Conference on the Biology of Marine Mammals, 29 Nov. - 3 Dec. 2007, Cape Town, South Africa.

Labrada-Martagón, V. A. Arias del Razo, R.A. Valdez, M.C. Romano, and E.O. Keith, E. (2007). Serum and saliva cortisol levels of California sea lion pups (Zalophus californianus californianus) born in a tourism rookery. 17th Biennial Conference on the Biology of Marine Mammals, 29 Nov. - 3 Dec. 2007, Cape Town, South Africa.

O'Brien, N. M., E.O. Keith, D.K. Odell, and S. Kennan. (2007). An analysis of Kogia stranding data from the southeastern United States. 17th Biennial Conference on the Biology of Marine Mammals, 29 Nov. - 3 Dec. 2007, Cape Town, South Africa.

Walsh, K. and E.O. Keith. (2007). Diurnal movements of the Florida Manatee, Trichechus manatus latirostris, in the Port Everglades Effluent Canal. 17th Biennial Conference on the Biology of Marine Mammals, 29 Nov. - 3 Dec. 2007, Cape Town, South Africa.

Shah, S., Y.J. Lin, P. Thomas, L. Rougui, K. Nguyen, V. Sharma, A. Janoff, and E.O. Keith. (2007). Adhesion of human lysozyme to balafilcon A (FDA Group III) Contact Lenses. FASEB Journal 21(5):A633.

Bills, M., E.O. Keith, and L. Garrison. (2007). Temporal and Spatial distribution of the Atlantic Bottlenose Dolphin, Tursiops truncatus, along the Northwest Atlantic Coastline. Southeast and Mid-Atlantic Marine Mammal Symposium, 16-19 March 2007, Beaufort, NC.

Keith, E.O. (2006). A matrix model of fasting metabolism in northern elephant seal pups. 2nd International Conference on Matrix Analysis and Applications, Nova Southeastern University, 15-17 Dec. 2006, Fort Lauderdale, FL.

Aragones, L.V., N. Knauer, J. Way, and E.O. Keith. (2006). Ecology and Conservation of cetaceans in southern Tañon Strait, Philippines. Annual meeting of the Sociedad Mexicana de Mastozoología Marina and the Sociedad Latinoamericana de Especialistas de Mamíferos Acuáticos, 5-9 November 2006, Mérida, Yuc., Mexico.

Labrada, V., and E.O. Keith. (2006). Behavior and serum cortisol levels of the California sea lion (Zalophus californianus californianus) in two zones of the rookery on Los Islotes, B.C.S., Mexico. Annual meeting of the Sociedad Mexicana de Mastozoología Marina and the Sociedad Latinoamericana de Especialistas de Mamíferos Acuáticos , 5-9 November 2006, Mérida, Yuc., Mexico.

Portilla, E., J.R. Hernández, C. Contreras, B.E. Cortina, and E.O. Keith. (2006). Status and recovery of the Antillean manatee (Trichechus manatus manatus) in the Alvarado Lagoon System, Veracruz, Mexico. Annual meeting of the Sociedad Mexicana de Mastozoología Marina and the Sociedad Latinoamericana de Especialistas de Mamíferos Acuáticos, 5-9 November 2006, Mérida, Yuc., Mexico.

Maurer, S.L., and E.O. Keith. (2006). Seasonal Dynamics of Osprey (Pandion haliaetus) in Port Everglades, Florida. Presented at the 4th North American Ornithological Conference, 4-8 October 2006, Veracruz, Mexico.

Keith, E.O., K.K. Keith, and J.O. Keith. (2006). Field ornithology as a risk factor for hypersensitivity pneumonitis and interstitial lung disease. 4th North American Ornithological Conference, 4-8 October 2006, Veracruz, Mexico.

Guentzel, J., and E.O. Keith. (2006). Mercury exposure in riverbank communities of the Alvarado Lagoon System, Veracruz State, Mexico. Mercury 2006 - Conference on Mercury as a Global Pollutant, 6-11 August 2006, Madison, WI.

Keith, E.O., and A. Janoff. (2006). Adhesion of tear proteins to contact lenses. 57th Pittsburgh Conference on Analytical Chemistry and Applied Spectroscopy, 12-17 March 2006, Orlando, FL.

Keith, E.O. (2005). Manatee Conservation in Mexico. Oral presentation at the Fifth International Sirenian Symposium, 12 December 2005, San Diego, CA.

Aragones, L.V., Way, J., Knauer, N., Kingery, A., Johnson, A., Senft, T., McManus, L., Villanueva, M., and Keith, E.O. (2005). Cetacean biology, conservation, and management in the southern Tañon Strait, Philippines. 16th Biennial Conference on the Biology of Marine Mammals, 12-16 December 2005, San Diego, CA.

Bigelow, M.M., and Keith, E.O. (2005). Levels of polycyclic aromatic hydrocarbons in subcutaneous blubber samples from the Florida manatee (Trichechus manatus latirostris). 16th Biennial Conference on the Biology of Marine Mammals, 12-16 December 2005, San Diego, CA.

Justice, N.A., Justice, W.J., and Keith, E.O. (2005). A corrosion casting study of the structure of cetacean kidneys. 16th Biennial Conference on the Biology of Marine Mammals, 12-16 December 2005, San Diego, CA.

Zaretsky, S.C., Garrison, L.P., Martinez, A., Keith, E.O. (2005). Comparisons of marine mammal vocalizations in the western North Atlantic and the northern Gulf of Mexico. 16th Biennial Conference on the Biology of Marine Mammals, 12-16 December 2005, San Diego, CA.

Guentzel, J.L., and E.O. Keith. (2005). Mercury exposure in riverbank communities of the Alvarado Lagoon System, Veracruz State, Mexico. Oral presentation at the 57th Southeast/61st Southwest Regional Meeting of the American Chemical Society. 1-4 November 2005, Memphis, TN.

Bigelow, M.M., Keith, E.O. (2005). Levels of polycyclic aromatic hydrocarbons in subcutaneous blubber samples from the Florida manatee (Trichechus manatus latirostris). Florida Marine Mammal Health II, 7-10 April 2005, Gainesville, FL.

Justice, N.A., Justice, W.J., and Keith, E.O. (2005). A corrosion casting study of the structure of cetacean kidneys. Florida Marine Mammal Health II, 7-10 April 2005, Gainesville, FL.

McCarty, J.L., and Keith, E.O. (2005). Influence of El Niño and lunar cycles on cetacean strandings. Florida Marine Mammal Health II, 7-10 April 2005, Gainesville, FL.

Wright, L. and Keith, E.O. (2005). The potential for underwater infrared video cameras to reduce boater-induced mortality of the Florida manatee. Florida Marine Mammal Health II, 7-10 April 2005, Gainesville, FL.

Brenes, G.A., A. Afaneh, A. Barry, G. Rasanen, F. Sattar, E. Yeoshova, U. Zamora, A. Janoff, and E.O. Keith. (2005). Adhesion of transferrin to FDA Group I and Group IV contact lenses. FASEB Journal 19(4):266-267.

Justice, N., and E.O. Keith. (2005). Preliminary investigations of the structure of cetacean kidneys. Southeast and Mid-Atlantic Marine Mammal Symposium, 18-20 March 2005, Wilmington, NC.

Keith, E.O. S. Pervaiz, and K. Brew. (2003). Lipocalins in marine mammals. 50th Benzon Symposium, Copenhagen, Denmark. 25-28 August 2003.

Goldman, R., and E.O. Keith. (2003). The small mammal fauna of John U. Lloyd Beach State Park. 5th Annual Conference of the Florida Chapter of The Wildlife Society, March 12-14, 2003. Vero Beach, FL.

Walker, R., Keith, E.O., D.K. Odell, and A. Yankovsky. (2003). The Seasonality of Mass Strandings: Implications for Cetacean Stranding Sites. Southeast and Mid-Atlantic Marine Mammal Symposium. 28-30 March 2003, Newport News, VA.

Hilliard, J., Goldman, R., and E.O. Keith. (2003). Seasonal aggregations of the Florida manatee (Trichechus manatus latirostris) in Port Everglades, Ft. Lauderdale, FL. Southeast and Mid-Atlantic Marine Mammal Symposium. 28-30 March 2003, Newport News, VA.

Manasijevic, M., E.O. Keith, and R. Ewing. (2003). Histopathologic cardiovascular changes observed in stranded rough-toothed dolphins (Steno bredanensis). Southeast and Mid-Atlantic Marine Mammal Symposium. 28-30 March 2003, Newport News, VA.

Keith, E.O., O. Lo, D. Gonzalez, J. Smith. S. Tapia, C. Drennen, and A. Janoff. (2003). Adhesion of albumin to FDA Group I contact lenses. Annual meeting of the Federation of American Societies for Experimental Biology, 11-15 April 2003, San Diego, CA.

Keith, E.O., A. Patidar, N. Hector, P. Smart, S. Ishmael, S. Tapia, and A. Janoff. (2003). Adhesion of albumin to FDA Group IV contact lenses. Annual meeting of the Federation of American Societies for Experimental Biology, 11-15 April 2003, San Diego, CA.

Keith, E.O., C. J. Hernandez-Camacho, and D. Aurioles-Gamboa. (2002). A matrix model of the population of California sea lions (Zalophus californianus) at Los Islotes, B.C.S. XXVII International Annual Meeting for the Study of Marine Mammals, 12-15 May, Veracruz, Mexico.

Portilla-Ochoa, E., B. E. Cortina-Julio, A. Ortega-Argueta, E. O. Keith, and F. Vanoye-Lara. (2002). Achievements of the manatee conservation program in Veracruz, Mexico. Manatee Conservation Workshop accompanying the XXVII International Annual Meeting for the Study of Marine Mammals, 12-15 May, Veracruz, Mexico.

Paine, A.L, W.E. Baxley, and E. O. Keith. (2002). Investigating the feasibility of thermal infrared imaging technology for passive marine mammal detection. Southeast and Mid-Atlantic Marine Mammal Symposium. 12-14 April, Conway, SC.

Hilliard, J., S. Zaretsky, M. Henning, A. Hester, and E.O. Keith. (2002). Seasonal occurrence of Florida manatees (Trichechus manatus latirostris) in Port Everglades, FL. Southeast and Mid-Atlantic Marine Mammal Symposium. 12-14 April, Conway, SC.

Siddiqui, H., L. Gedeon, K. Latif, N. Lopez, M. Samuel, L. Janoff, and E.O. Keith. (2002). Adhesion of lysozyme to FDA group III contact lenses and vials. Poster presentation at the American Chemical Society annual meeting, 7-11 April 2002, Orlando, FL.

Hudak, C., J. Contillo, S. Swartz, and E. O. Keith. (2001). Habitat Utilization of Bottlenose Dolphins (Tursiops truncatus) in Biscayne Bay, Florida. Oral presentation at the XIV Biennial Conference on the Biology of Marine Mammals, Vancouver, BC, Canada. 28 November-3 December 2001.

Ortega-Argueta, A., E. Portilla-Ochoa, and E. O. Keith. (2001). A Regional Manatee Recovery Plan for the Alvarado Lagoon System, Veracruz, Mexico. Poster presented at the XIV Biennial Conference on the Biology of Marine Mammals, Vancouver, BC, Canada. 28 November-3 December 2001.

Keith, E.O., R. Ghorsriz, R. Gadh, M. Boltz, D. Mangatt, and L. Janoff. (2001) Adhesion of tear proteins to contact lenses and vials determined by HPLC and BCA. FASEB J. 15:A530.

Keith, E. O. (2000). A Matrix Model of Fasting Metabolism in Northern Elephant Seal Pups. VII Conference on the Mathematical Modeling in Nutrition and the Health Sciences. 29 July -1 August, Pennsylvania State University, State College, PA.

Gadh, R., M. Boltz, D. Mangatt, L. Janoff, and E.O. Keith. (2000). Adhesion of Tear Proteins to Contact Lenses and Vials as Determined by HPLC. American Association for Biochemistry and Molecular Biology annual meeting, 4-8 June 2000. FASEB J. 14(8):A1472, 2000.

Keith. E.O., D.B. McClellan, and J.L. Tobias. (2000). Los Mamíferos Marinos de Port Everglades, Florida: Resultados de estudios del barco y observaciónes oportunisticas de NOAA/USCG estudios aéreos del helicóptero. XXV Annual Meeting of the Sociedad Mexicana para el Estudio de los Mamíferos Marinos (the Mexican Marine Mammal society), 6-11 May 2000, La Paz, B.C.S., Mexico.

Keith, E.O. (1999). Stability analysis of a matrix model of metabolite flux in northern elephant seal pups undergoing natural fasting after weaning. 13th Biennial Conference on the Biology of Marine Mammals, 28 November to 3 December, Kihei, Maui, HI.

Keith, E.O. (1999). A matrix model of metabolite flux in northern elephant seal pups undergoing natural fasting after weaning. Fifth International Congress of Comparative Physiology and Biochemistry. 23-28 August, Calgary, Canada. Comp. Biochem. Physiol. 124A:S100, 1999.

Keith, E.O., and L. E. Janoff. (1999). Tear Protein Adherence to Contact Lenses Studied by Two HPLC Methods. 26th Meeting of the Federation of European Biochemical Societies (19-24 June), Nice, France. Biochemie 81:S286, 1999.

Keith, E.O., and L.E. Janoff. (1999). Identification and Quantification of Tear Proteins Adhering to Contact Lenses by HPLC. American Association for Biochemistry and Molecular Biology annual meeting, 16-20 May, San Francisco, CA. FASEB J. 13(8):A1479, 1999.

Keith, E. O., and Janoff, L. E. (1998). Separation and quantification of tear proteins using high pressure liquid chromatography. 22nd Annual Symposium On High Performance Liquid Phase Separations and Related Techniques. 2-8 May 1998, St. Louis, MO.

Keith, E.O., and Brew, K. (1998). Molecular phylogenetics of the pinnipedia. World Marine Mammal Science Conference, 20-24 Jan. 1998, Monaco.

Keith, E.O., and Brew, K. (1996). Molecular phylogenetics of the pinnipedia. Invited paper at the V Int. Conf. Syst. Evol. Biol., 17-24 Sept. 1996, Budapest, Hungary.

Keith, E.O., Yadav, S., Greene, L., and Brew, K. (1995). Molecular phylogenetics of the walrus (Odobenus rosmarus). XI Biennial Conference on the Biology of Marine Mammals, 14-18 Dec. 1995, Orlando, FL.

Keith, E.O., Fischer, A.M., Grobler, J., and Brew, K. (1993). Molecular approaches to marine mammal origins. X Biennial Conference on the Biology of Marine Mammals, 11-15 Nov. 1993, Galveston, TX.

KERSTETTER, DAVID W., Ph.D., Research Scientist

Publications

Serafy, J.E., D.W. Kerstetter, and P.H. Rice. 2009. Can circle hook use benefit billfishes? Fish and Fisheries 10: 132-142.

Kerstetter, D.W., S. M. Bayse, and J.E. Graves. 2009. Sailfish (Istiophorus platypterus) habitat utilization in the southern Gulf of Mexico and Florida Straits, with implications on vulnerability to shallow-set pelagic longline gear. ICCAT Collected Volume of Scientific Papers, SCRS/2009/048.

Kerstetter, D.W. and M.L. Taylor. 2008. Live release of a bigeye sand tiger (Odontapsis noronhai) in the western North Atlantic. Bulletin of Marine Science 83: 465-469.

Kerstetter, D.W., and J.E. Graves. 2008. Postrelease Survival of Sailfish Caught by Commercial Pelagic Longline Gear in the Southern Gulf of Mexico. North American Journal of Fisheries Management 28:1578-1586.

Kerstetter, D.W., P.H. Rice, D. Snodgrass, and E.D. Prince. 2008. Behavior of an escolar Lepidocybium flavobrunneum in the Windward Passage as determined by pop-up satellite archival tagging. Gulf and Caribbean Research 20: 97-102.

Kerstetter, D.W. 2008. Measuring the length of a pelagic longline set: applications for management. North American Journal of Fisheries Management 28: 378-385.

Levesque, J.* and D.W. Kerstetter. 2007. First observations on the re-established southeast Florida recreational swordfish tournament fishery. Florida Scientist 70(3): 284-296.

Horodysky, A.Z., R. Latour, D.W. Kerstetter, and J.E. Graves. 2007. Habitat preferences and vertical movements of white marlin (Tetrapturus albidus) tagged with short-duration pop-up archival satellite tags (PSATs) in the western North Atlantic Ocean. Fisheries Oceanography 16(3): 240-256.

Watson, J. and D.W. Kerstetter. 2006. Pelagic longline fishing gear: a brief history and discussion of research efforts to improve selectivity and sustainability. Marine Technology Society Journal 40(3): 5-10.

Kerstetter, D.W., and J.E. Graves. 2006. Effects of circle versus J-style hooks on target and non-target species in a pelagic longline fishery. Fisheries Research 80(3):239-250.

Kerstetter, D.W., and J.E. Graves. 2006. Survival of white marlin (Tetrapturus albidus) released from commercial pelagic longline gear in the western North Atlantic. Fishery Bulletin 104(3): 434-444.

Kerstetter, D.W. and J.E. Graves. 2006. Post-release survival of sailfish captured on pelagic longline gear. ICCAT Collected Volume of Scientific Papers, SCRS/2006/149.

Kerstetter, D.W. and F.H.V. Hazin. 2006. Joint United States-Brazil billfish research in the western South Atlantic. ICCAT Collected Volume of Scientific Papers, SCRS/2006/159.

Kerstetter, D.W. J.C. Pacheco, F.H.V. Hazin, P. Travassos, and J.E. Graves. 2006. Preliminary results of circle and J-style hook comparisons in the Brazilian pelagic longline fishery. ICCAT Collected Volume of Scientific Papers, SCRS/2006/150.

Kerstetter, D.W., J. Polovina, and J.E. Graves. 2004. Evidence of shark predation and scavenging on fishes equipped with pop-up satellite archival tags. Fishery Bulletin 102(4): 750-756.

Kerstetter, D.W. 2004. Preliminary gear comparison between 16/0 and 18/0 non-offset circle hooks in the directed swordfish fishery. VIMS Marine Research Report 04-7.

Horodysky, A.Z., D.W. Kerstetter, and J.E. Graves. 2004. Habitat preferences and diving behavior of white marlin (Tetrapterus albidus) released from the recreational troll and commercial pelagic longline fisheries in the western North Atlantic Ocean: Implications for habitat-based stock assessment models. ICCAT Collected Volume of Scientific Papers 56(1): 160-168.

Kerstetter, D.W., B.E. Luckhurst, E.D. Prince, and J.E. Graves. 2003. Use of pop-up satellite archival tags to demonstrate survival of blue marlin (Makaira nigricans) released from pelagic longline gear. Fishery Bulletin 101(4): 939-948.

Goodyear, C.P., D. Die, D.W.Kerstetter, D.B. Olson, E. Prince, and G.P. Scott. 2003. Habitat standardization of CPUE indices: Research needs. ICCAT Collected Volume of Scientific Papers 55(2): 613-623.

Graves, J.E., D.W. Kerstetter, B.E. Luckhurst, and E.D. Prince. 2003. Habitat preferences of istiophorid billfishes in the western North Atlantic: Applicability of archival tag data to habitat-based stock assessment methodologies. ICCAT Collected Volume of Scientific Papers 55(2): 594-602.

Kerstetter, D.W. and J.E. Graves. 2002. Evaluating Closed-Area Management Regimes in the Gulf of Mexico, Northwest Atlantic, and Central Pacific Highly Migratory Species Longline Fisheries. Pelagic Fisheries Research Program Report.

DuPaul, W.D., D.B. Rudders, and D.W. Kerstetter. 1999. Results of modifications to sea scallop dredge twine tops to facilitate the reduction of finfish bycatch: Georges Bank Closed Area II experimental fishery, September-October 1998. VIMS Marine Research Report 99-4.

Kirkley, J.E. and D.W. Kerstetter. 1997. Saltwater angling and its economic importance to Virginia. Virginia Sea Grant Special Report 339, 71 pp.

KOHLER, KEVIN E., M.S., Director, Computing Services

Publications

Riegl, B., R.P. Moyer, B.K. Walker, K. Kohler, D. Gilliam, and R.E. Dodge. 2008. A Tale of Germs, Storms, and Bombs: Geomorphology and Coral Assemblage Structure at Vieques (Puerto Rico) Compared to St. Croix (U.S. Virgin Islands).Journal of Coastal Research, Vol. 24, No. 4,1008-1021.

Purkis, S.J., K.E. Kohler, B.M. Riegl, S.O. Rohmann. 2007. The Statistics of Natural Shapes in Modern Coral Reef Landscapes. Journal of Geology 115:493-508.

Kohler, K.E. and S.M. Gill, 2006. Coral Point Count with Excel extensions (CPCe): A Visual Basic program for the determination of coral and substrate coverage using random point count methodology. Computers and Geosciences, Vol. 32, No. 9, pp. 1259-1269, DOI:10.1016/j.cageo.2005.11.009.

Kohler, K.E. and R.E. Dodge, 2006. Visual_HEA: Habitat Equivalency Analysis software to calculate compensatory restoration following natural resource injury. Proceedings of the 10th International Coral Reef Symposium. Okinawa, Japan. pp. 1611-1616.

Riegl B.M., S.J. Purkis, K.E. Kohler, and R.E. Dodge, 2006. Spatial patterns in Arabian Gulf coral assemblages (Jebel Ali, Dubai, U.A.E.) in response to temperature-forcing. Proceedings of the 10th International Coral Reef Symposium. Okinawa Japan. pp. 683-687.

Vinayachandran, P.N., J.P. McCreary, Jr., R.R. Hood, and K.E. Kohler. 2005. A numerical investigation of the phytoplankton bloom in the Bay of Bengal during Northeast Monsoon. Journal of Geophysical Research, 110, C12001, doi:10.1029/2005JC002966.

Hood, R.R., K.E. Kohler, J.P. McCreary, and S. Smith, 2003. A four-dimensional validation of a coupled physical-biological model of the Arabian Sea. Deep Sea Research II, 50, p. 2917-2945.

McCreary, J.P., K.E. Kohler, R.R. Hood, S. Smith, J. Kindle, A.S. Fischer, and R.A. Weller, 2001. Influences of diurnal and intraseasonal forcing on mixed-layer and biological variability in the central Arabian Sea. Journal of Geophysical Research, 106, C4, p. 7139-7155.

Han, W., McCreary, J.P., and K.E. Kohler, 2001. Influence of precipitation minus evaporation and Bay of Bengal rivers on dynamics, thermodynamics, and mixed layer physics in the upper Indian Ocean. Journal of Geophysical Research, 106, C4, p.6985-6916.

McCreary, J.P., K.E. Kohler, R.R. Hood and D.B. Olson, 1996. A four-component ecosystem model of biological activity in the Arabian Sea. Prog. Oceanogr. , 117-165.

Kohler, Kevin E., 1993. PSPLOT - Postscript for technical drawings: A Fortran-callable PostScript plotting library: User's manual. Nova Univ. Oceanogr. Ctr. Tech. Rep. NOVA-93-2. 82 pp.

Kohler, Kevin E., 1991. 2-D graphics for modellers: A User's Manual. Nova Univ. Oceanogr. Ctr. Tech. Report. NOVA-91-1. 57 pp.

LOPEZ, JOSE V., Ph.D., Associate Professor

Publications

Perez, R., Liu, L., Lopez, J., An, T., and K.S. Rein. 2008. Diverse Bacterial PKS Sequences Derived From Okadaic Acid-Producing Dinoflagellates. Mar. Drug 6, 164-179; DOI: 10.3390/md20080009.

Cassler, M., Winegar, R. , McCarthy, P.J., Pomponi, S.A., Peterson, C.L, Wright, A.E, Lopez, J.V. Use of Real-Time PCR to quantitate the unculturable heterotrophic bacterial community in deep sea marine sponges of the family Lithistidae. Microbial Ecologyo In Press.

Young C. Park, Sarath P. Gunasekera, Peter J. McCarthy, JV Lopez. and Amy E. Wright. 2006 New Metabolites from the Marine Derived Fungus Chromocleista sp. Isolated from the Deep-Water Sediment Sample Collected in the Gulf of Mexico. J. Natl Products 69:580-584.

Lopez, J.V. 2005. Some preservation techniques for (deep water) coral samples. In Deep-sea Coral Collection Protocols. (Ed. Peter Etnoyer and DSC Panel of Experts). NOAA Technical Memorandum NMFS-OPR-28 NOAA Office of Ocean Exploration.

Snyder, RV , Guerrero, M., Sinigalliano, C., Winshell, J, Perez, R., Lopez, JV and K. S. Rein. 2005. Localization of polyketide synthase encoding genes to the toxic dinoflagellate Karenia brevis. Phytochemistry 66:1767-1780.

Lopez, J.V. The Perfect Microbial Hotel: A Molecular Taxonomic Survey Of Marine Sponge Microbial Communities. International Symbiosis Society Newsletter. Fall 2004.

Gunasekera, A., Sfanos, K.A, McCarthy, P.J., Lopez, J.V. 2005. HBMMD: an enhanced database of the microorganisms associated with deeper water marine invertebrates. Applied Microbiol. Biotechnol. 2005 Jan;66(4):373-376. Epub 2004 Nov 16.

Sfanos, K.A.S., Harmody, D.K., McCarthy, P.J., Dang, P., Pomponi, S.A. and Lopez, J.V. 2005. A Molecular Systematic Survey of Cultured Microbial Associates of Deep Water Marine Invertebrates. System Appl Microbiol. 28 (3):242-264.

Sandell, K.A., Peterson, C.L., Harmody, D.K., McCarthy, P.J., Pomponi, S.A., Lopez, J.V. 2004 Molecular systematic survey of sponge ­ derived marine microbes. 6th International Sponge Conference Proceedings. Boll. Mus Ist. Univ. Genova. 68:579-585.

Lopez, J.V. 2003 Naturally mosaic secondary metabolite operons: Variability and putative horizontal transfer of discrete catalytic domains in the epothilone polyketide synthase locus. Mol Genet Genomics 270:420-431.

Enright, E., Lopez, J.V., Peterson, C.L., Pomponi, S.A. 2002 Cloning and characterization of two cyclin dependent kinase (CDK) homologues from the marine sponge, Axinella corrugata. 2002 Boll. Mus Ist. Univ. Genova 66-67:63.

Takabayashi, M., Carter, D.A., Lopez, J.V., Guldberg, O.H. 2003 Genetic Variation of the scleractinian coral, Stylophora pistillata, from Western Pacific reefs. Coral Reefs 22: 17-22.

Snyder, R.V, Gibbs, P. D. L. , Palacios, A., Abiy, L , Dickey, R., Lopez, J.V, Rein, K.S 2003. Polyketide Synthase Genes from Marine Dinoflagellates. Marine Biotechnology. 5:1-12.

Sandell, K.A., Peterson, C.L., Harmody, D.K., McCarthy, P.J., Pomponi, S.A., Lopez, J.V. 2002. Molecular systematic survey of sponge ­derived marine microbes. Abstract. Boll. Mus Ist. Univ. Genova 66-67:172.

Lopez, J.V. Fall 2002. An Awesome Encounter with a Florida Scrub Native. Eco-Florida. Pp 26-28.

Lopez, J.V. Peterson, C.L., Willoughby, R., Wright, A.E., Enright, E., Zoladz, S., Pomponi, S.A. 2002. Characterization of genetic markers for in vitro cell line identification of the marine sponge, Axinella corrugata. Journal of Heredity. 93:27-36.

Lopez, J.V., Peterson, C.L., Morales, F., Brown, L. 2000. Molecular Studies of Caribbean Biodiversity In The Field: Indian River Lagoon, Fl And Andros Island, Bahamas. Proceedings of MarCuba 2000, Dec 4- 8, 2000. CD version. Intergovernmental Oceanographic Commission of UNESCO, Havana, Cuba.

Lopez, J.V., Peterson, C.L., Morales, F., Brown, L. 2000. Molecular Studies of Biodiversity in the Field: Andros Island Flora and Fauna in the New Millennium. Bahamas Journal of Science. Bahamas Journal of Science. 8:32-41.

Lopez, J.V. McCarthy, P.J., Janda, K.E.,Willoughby, R., Pomponi, S.A. (1999) Molecular techniques reveal wide phyletic diversity of heterotrophic microbes associated with the sponge genus Discodermia (Porifera:Demospongiae). Proceedings of the 5th International Sponge Symposium. Memoirs of the Queensland Museum. 44: 329-341. Brisbane ISSN 0079-8835.

Lopez, J.V., Kersanach, R., Rehner, S.A., Knowlton, N. (1999) Molecular determination of species boundaries in corals: Genetic analysis of the Montastraea annularis complex using amplified fragment length polymorphisms and a microsatellite marker. Biol. Bull. 196:80-93.

Pomponi, S.A., Willoughby, R., Wright, A.E., Pecorella, C., Lopez, J. V., Samples, G. (1998) In vitro production of marine-derived compounds. In New Developments in Marine Biotechnology (Eds. Y.Le Gal and H.O. Halvorson) Plenum Press, New York. Pp. 73 ­ 76.

Lopez, J.V., Knowlton, N. (1997) Discrimination of the sibling species of the Montastraea annularis complex with multiple genetic loci. Proceedings of the 8th International Coral Reef Symposium, Rep. of Panama. 2:1613-1618.

Lopez, J.V., Stephens, J.C, O'Brien, S.J. (1997) The long and short of nuclear mitochondrial lineages. Trends Ecol. Evol. 12(3):114

Lopez, J.V., Culver, M., Stephens, J.C., Johnson, W.E., O'Brien, S.J. (1997) Rates of nuclear and cytoplasmic mitochondrial sequence divergence in mammals. Mol Biol and Evol. 14(3):277-286.

Masuda, R., Lopez, J.V., Pecon-Slattery, J., Yuhki, N. O'Brien, S.J. (1996) Estimating the phylogeny of the Felidae with two mitochondrial gene sequences. Molecular Phylogenetics and Evolution 6(3):351.

Lopez, J.V. (1994) Taking a cat map: whole genome analysis by supercomputer. In Computational Biomedical Research (Monograph) NCI-Biological Supercomputing Center, NCI-FCRDC.

Lopez, J.V., Cevario, S., O'Brien, S.J. (1996) Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome. Genomics 33:229-246.

Hoelzel, A.R., Lopez, J.V., Dover, G.A., O'Brien, S.J. (1994) Rapid evolution of a heteroplasmic repetitive region in the mitochondrial control region of carnivores. J. Mol. Evol. 39:191-199.

Lopez, J.V., Yuhki, N., Modi, W., Masuda, R., O'Brien, S.J. (1994) Numt, a recent transfer and tandem amplification of mitochondrial DNA in the nuclear genome of the domestic cat. J. Mol. Evol. 39:171-190.

McCREARY, JULIAN P., Ph.D., Professor

Publications

Han, W., J. P. McCreary, D. L. T. Anderson, and A. Mariano, 1998. On the dynamics of the eastward surface jets in the equatorial Indian Ocean. J. Phys. Oceanogr. (To be submitted.)

Lu, P., J. P. McCreary and B. A. Klinger, 1998. Meridional circulation cells and source waters of the Pacific Equatorial Undercurrent.J. Phys. Oceanogr., 62-84.

McCreary, J. P., S. Zhang and S. R. Shetye, 1997. Coastal circulations driven by river outflow in a variable-density 1-layer model. J. Geophys. Res., 15,535-15,554.

Yu, Z., P.S. Schopf and J.P. McCreary, 1997. On the annual cycle in the eastern Pacific Ocean. J. Phys. Oceanogr., 309-324.

McCreary, J.P., K.E. Kohler, R.R. Hood and D.B. Olson, 1996. A four-component ecosystem model of biological activity in the Arabian Sea. Prog. Oceanogr. , 117-165.

McCreary, J.P., W. Han, D. Shankar and S.R. Shetye, 1996. Dynamics of the East India Coastal Current: Part 2, numerical solutions. J. Geophys. Res., 101, 13,993-14,010.

D. Shankar, J. McCreary, W. Han and S.R. Shetye, 1996. Dynamics of the East India Coastal Current: Part 1, analytic solutions forced by interior Ekman pumping and local alongshore winds. J. Geophys. Res.,13, 975-13,991.

Lu, P. and J.P. McCreary, 1996. Influence of the ITCZ on the flow of thermocline water from the subtropical to the equatorial Pacific Ocean. J. Phys. Oceanogr., 3076-3088.

Yu, Z., J.P. McCreary, and J.A. Proehl, 1995. On the meridional asymmetry and energetics of tropical instability waves.J. Phys. Oceanogr., 2998-3007.

Fukamachi, Y., J.P. McCreary, and J.A. Proehl, 1995. Instability of density fronts in layered and continuously stratified models. J. Geophys. Res., 2559-2577.

Yu, Z., J.P. McCreary, and J.A. Proehl, 1995. On the meridional asymmetry and energetics of tropical instability waves. J. Physical Oceanography. (Accepted.)

*Fukamachi, Y., J.P. McCreary, and J.A. Proehl, 1995. Instability of density fronts in layered and continuously stratified models. J. Geophys. Res.(In press.)

*McCreary, J.P. and P. Lu, 1994: On the interaction between the subtropical and equatorial ocean circulation: the subtropical cell. Journal of Physical Oceanography, 24, 466-497.

McCreary, J.P., P.K. Kundu, and R.L. Molinari, 1993. Some aspects of the dynamics and thermodynamics of the Indian Ocean. Prog. Oceanogr. 31, 181-244.

*McCreary, J.P., Y. Fukamachi, and P. Lu, 1992. A nonlinear mechanism for maintaining coastally trapped eastern boundary currents. J. Geophys. Res., 97, 5677-5692.

*McCreary, J.P., and Z. Yu, 1992. Equatorial dynamics in a 2-1/2 layer model. Progr. Oceanogr., 28, 61-132.

McCreary, J.P., and D.L.T. Anderson, 1991. An overview of coupled models of El Niño and the Southern Oscillation. J. Geophys. Res.,96, 3125-3150.

*McCreary, J.P., Y. Fukamachi, and P.K. Kundu, 1991. A numerical investigation of jets and eddies near an eastern boundary. J. Geophys. Res., 96, 2521-2534.

Moore, D.W., and J.P. McCreary, 1990. Excitation of intermediate-frequency equatorial waves at a western boundary: with application to observations from the western Indian Ocean. J. Geophys. Res., 95, 5219-5231.

McCreary, J.P., and P.K. Kundu, 1989. A numerical investigation of sea surface temperature variability in the Arabian Sea. J. Geophys. Res., 94, 16097-16114.

McCreary, J.P., H.S. Lee, and D.B. Enfield, 1989. The response of the coastal ocean to strong offshore winds: with application to circulations in the Gulfs of Tehuantepec and Papagayo, J. Mar. Res., 47, 81-109.

McCreary, J.P., and P.K. Kundu, 1988. A numerical investigation of the Somali Current during the Southwest Monsoon. J. Mar. Res., 46, 25-58.

McCreary, J.P., P.K. Kundu, and S.-Y. Chao, 1988. On the dynamics of the California Current system. J. Mar. Res., 45, 1-32.

McCreary, J.P., and P.K. Kundu, 1987. On the dynamics of the throughflow from the Pacific into the Indian Ocean. J. Phys. Oceanogr., 16, 2191-2198.

McCreary, J.P., 1987. A model of deep equatorial jets. In: Further Progress in Equatorial Oceanography, E.J. Katz and J.M. Witte, Eds., Nova Univ. Press, Ft. Lauderdale, FL, 385-396.

McCreary, J.P., 1986. Coupled ocean-atmosphere model of El Niño and the Southern Oscillation. In: Large-scale Transport Processes in Oceans and Atmopsheres, J. Willebrand and D.L.T. Anderson, Eds., Dordrecht, Holland, D. Reidel, 247-280.

McCreary, J.P., and R. Lukas, 1986. The response of the equatorial ocean to a moving wind field. J. Geophys. Res., 91, 11691-11705.

McCreary, J.P., and P.K. Kundu, 1986. Thermohaline forcing of eastern boundary currents: with application to the circulation off the west coast of Australia. J. Mar. Res., 44, 71-92.

Anderson, D.L.T., and J.P. McCreary, 1985. A note on the role of the Indian Ocean in a coupled atmosphere-ocean model of El Niño and the Southern Oscillation. J. Atmos. Sci., 42, 2439-2442.

Rothstein, L., D.W. Moore, and J.P. McCreary, 1985. Interior reflections of a periodically forced equatorial Kelvin wave. J. Phys. Oceanogr., 15, 985-996.

McCreary, J.P., and D.L.T. Anderson, 1985. Simple models of El Niño and the Southern Oscillation. In: Coupled Ocean-Atmosphere Models, Proc. Int. Liege Colloq. Ocean Hydrodyn.,, J.C.J. Nihoul, Ed., 16th, Amsterdam: Elsevier, 345-370.

McCreary, J.P., 1985. Modeling equatorial ocean circulation. Ann. Rev. Fluid Mech., 17, 359-409.

Kundu, P.K., and J.P. McCreary, 1985. Western boundary circulation driven by an alongshore wind: with application to the Somali Current system. J. Mar. Res., 43, 493-516.

Anderson, D.L.T., and J.P. McCreary, 1985. Slowly propagating disturbances in a simple coupled ocean-atmosphere system. J. Atmos. Sci., 42, 615-629.

McCreary, J.P. and S-Y. Chao, 1985. Three-dimensional shelf circulation along an eastern ocean boundary. J. Mar. Res., 43, 13-76.

MAXSON, KATHLEEN A., M.A., Librarian

Publications

Maxson, K.A. 2001. Evolution of a security system for a small library. In: Markham, J.W. and Duda, A.L. (Eds). Tides of Technology: proceedings of the 26th Annual Conference of the International Association of Aquatic and Marine Science Libraries and Information Cetners, Victoria, B.C. Sept. 3-Oct. 5, 2000, IAMSLIC, Fort Pierce, FL.,43-48.

MESSING, CHARLES G., Ph.D., Associate Professor

Publications

Abstracts

MOULDING, ALISON, Ph.D., Research Scientist

Publications

Rubin ET, Moulding AL, Lopez JV, Gilliam DS, Kosmynin VN, Dodge RE (in press) Scleractinian coral recruitment patterns to reefs physically damaged by ship groundings. Proceedings 11th International Coral Reef Symposium.

Moulding, AL. 2005. Coral recruitment patterns in the Florida Keys. Revista de Biología Tropical (International Journal of Tropical Biology and Conservation) 53 (Suppl. 1): 75-82.

Tilmant J, Canzanelli L, Clark R, Curry R, Graham B, Mayr M, Moulding A, Mulcahy R, Viehman S, Whittington T. 2004. Restoration of coral reef habitats within the National Park system. In: Harmon, D.Kilgore, B.M., Vietzke, G.E. (eds) Protecting Our Diverse Heritage: the Role of Parks, Protected Areas, and Cultural Sites. (Proceedings of the 2003 George Wright Society/National Park Service Joint Conference). George Wright Society, Michigan, pp 234-239.

Ph.D. Dissertation

Moulding AL. 2007. Coral recruitment in the Florida Keys: patterns, processes, and applications to reef restoration. PhD dissertation. University of Miami. Coral Gables, Florida. 157 pp.

Abstracts and Presentations

Renegar DA, Blackwelder PL, Moulding AL. Effect of nutrients and pCO2 on wound repair in Montastraea cavernosa and Porites astreoides. 34th Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Roseau, Dominica, May 2009.

Moulding AL, Gilliam DS, Kosmynin VN, Dodge RE. Coral recruitment and implications for reef restoration in southeast Florida, USA. 34th Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Roseau, Dominica, May 2009.

St. Gelais AT, Moulding AL, Gilliam DS, Kosmynin VN. Coordination of gametogenesis and spawning in Siderastrea siderea, southeast Florida, USA. 34th Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Roseau, Dominica, May 2009.

Brownlee AS, Gilliam DS, Moulding AL, KosmyninVN, Banks KW, Fisher LE. Transplantation success and predation pressure on small (<10cm diameter) Siderastrea siderea colonies offshore southeast Florida, USA. 34th Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Roseau, Dominica, May 2009.

Lueg JR, Gilliam DS, Moulding AL, Kosmynin VN. Solenastrea bournoni and Stephanocoenia intersepta sexual reproduction offshore southeast Florida, USA. 34th Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Roseau, Dominica, May 2009.

Renegar DA, Moulding AL, Blackwelder PA, Kosmynin VN, Gilliam DS, Dodge RE. Success of Montastraea cavernosa and Porites astreoides fragments in the field and in a land-based nursery. 34th Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Roseau, Dominica, May 2009.

St. Gelais AT, Brownlee AS, Gilliam DS, Moulding AL, Kosmynin VN. Gamete production in small Siderastrea siderea colonies offshore Broward County, Florida, USA. 34th Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Roseau, Dominica, May 2009.

Renegar DA, Blackwelder PL, Moulding AL. Coral ultrastructural response to elevated pCO2 and nutrients during tissue repair and regeneration. 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

Moulding AL, Gilliam DS, Kosmynin VN, and Dodge RE. Natural and enhanced coral reef recovery after injury. 11th International Coral Reef Symposium, Ft. Lauderdale, FL. July 2008.

Kosmynin V, Moulding A, Dodge R, Gilliam D. Restore or not to restore? 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

St. Gelais AT, Moulding AL, Gilliam DS, Kosmynin VK, Dodge RE. Gametogenesis of the hermatypic coral Siderastrea siderea in Broward County, Florida, USA and the effect of bleaching on fecundity. 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

Brinkhuis V, Moulding A, Kosmynin V, Gilliam D. Assessment of gorgonian transplantation techniques offshore southeast Florida, USA. 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

Rubin E, Moulding A, Lopez J, Gilliam D, Dodge R, Kosmynin V. Scleractinian coral recruitment patterns to reefs physically damaged by ship groundings. 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

Dustan P, Moulding A, Wham D, Lang J. Ecological forecast using rapid survey reef demographics. 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

Brownlee A, Kosmynin V, Moulding A, Banks K, Fisher L, Gilliam D. Fish predation on juvenile stony coral, Siderastrea siderea, transplanted offshore southeast Florida, USA. 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

Renegar DA, Blackwelder PL, Gotchfeld DJ, Moulding AL. Ultrastructural and histological analysis of Dark Spot Syndrome (DSS) in Siderastrea siderea and Agaricia agaricites. 11th International Coral Reef Symposium, Ft. Lauderdale, FL, July 2008.

Gilliam DS, Moulding AL, Kosmynin VK, Brinkhuis V, and Dodge RE. Evaluation of methods to enhance reef restoration. 33rd Conference of the Association of Marine Laboratories of the Caribbean, St. Thomas, U.S. Virgin Islands, June 2007.

Moulding AL, Gilliam DS, Kosmynin V, Dodge RE Evaluation of methods to enhance reef restoration. International Society for Reef Studies European Meeting, Bremen, Germany, September 2006.

Renegar DA Blackwelder PL, Ritchie KB, Gochfeld DJ, Moulding AL, Riegl BM, Portnoy DA, Alsayegh H. Ultrastructural analysis in the elucidation of disease in reef-building corals. International Society for Reef Studies European Meeting, Bremen, Germany, September 2006.

Moulding AL, Gilliam DS, Kosmynin VN, and Dodge RE. Enhancement of reef restoration through applied science. American Society of Limnology and Oceanography Summer 2006 Meeting, Victoria, British Columbia, Canada, June 2006.

Moulding AL Coral recruitment to three reef restoration sites in the Florida Keys. 10th International Coral Reef Symposium, Okinawa, Japan. June 2004.

Moulding AL Coral recruitment patterns in the Florida Keys. 31st Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Trinidad. July 2003.

Patterson M, and Moulding A. Remote sensing of coral reefs in Biscayne National Park at 40 cm. Seventh International Conference of Remote Sensing for Marine and Coastal Environments, Miami, Florida. May 2002.

PURKIS, SAMUEL, Ph.D., Assistant Professor

Publications

Riegl BM, Purkis SJ, Keck J, Rowlands GP (2009) Monitored and modeled coral population dynamics and the refuge concept. Marine Pollution Bulletin 58:24-38

Riegl BM, Purkis SJ (2009) Model of coral population response to accelerated bleaching and mass mortality in a changing climate. Ecological Modelling 220:192-208

Purkis, S.J and K.E. Kohler. 2008 The role of topography in promoting fractal patchiness in a carbonate shelf landscape. Coral Reefs 27:977-989.

Riegl BM, Purkis SJ, Houk P, Cabrera G, Dodge RE (2008) Geologic setting and geomorphology of coral reefs in the Mariana Islands (Guam and Commonwealth of the Northern Mariana Islands). In: Coral Reefs of the USA. Riegl BM Dodge RE (Eds) 687-715 pp.

Rowlands GP, Purkis SJ, Riegl BM (2008) The 2005 Coral-bleaching Event Roatan (Honduras): Use of Pseudoinvariant Features (PIFs) in Satellite Assessments. Journal of Spatial Science 53:99\226112.

Purkis SJ, Graham NAJ, Riegl BM (2008) Predictability of reef fish diversity and abundance using remote sensing data in Diego Garcia (Chagos Archipelago). Coral Reefs 27:167-178.

Myint S.W., Wentz L., Purkis S.J.. 2007. Employing Spatial Metrics in Urban Land-use/Land-cover Mapping: Comparing the Getis and Geary Indices. Photogrammetric Engineering & Remote Sensing. 73:1403-1415 AAG REMOTE SENSING SPECIALITY GROUP 2007 AWARD WINNER

Purkis, S.J., K.E. Kohler, B.M. Riegl, S.O. Rohmann. 2007. The Statistics of Natural Shapes in Modern Coral Reef Landscapes. Journal of Geology 115:493-508.

Papastamatiou, Y.P., S.J. Purkis, K.N. Holland. 2007. The response of gastric pH and motility to fasting and feeding in free swimming blacktip reef sharks, Carcharhinus melanopterus. Journal of Experimental Marine Biology and Ecology. 345:129-140.

Riegl, B.M., J. Halfar, S.J. Purkis, and L. Godinez-Orta (2007) Sedimentary facies of the eastern Pacific’s northernmost reef-like setting (Cabo Pulmo, Mexico). Marine Geology 236:61-77.

Hernández-Cruz L.R., S.J. Purkis, B.M. Riegl (2006) Documenting decadal spatial changes in seagrass and Acropora palmata cover by aerial photography analysis in Vieques, Puerto Rico: 1937–2000. Bulletin of Marine Science. 79(2):401–414

Purkis, S.J., B.M Riegl, R.E. Dodge. 2006. Fractal patterns of coral communities: evidence from remote sensing. Proceedings of the 10th International Coral Reef Symposium, Okinawa, Japan. July 2004, p. 1753-1762.

Riegl, B.M., S.J. Purkis, K.E. Kohler, R.E. Dodge. 2006. Spatial patterns in Arabian Gulf coral assemblages (Jebel Ali, Dubai, U.A.E.) in response to temperature-forcing. Proceedings of the 10th International Coral Reef Symposium. Okinawa, Japan. July 2004, p. 683-687.

Purkis, S.J., S. Myint, B.M. Riegl. 2006. Enhanced detection of the coral Acropora cervicornis from satellite imagery using a textural operator. Remote Sensing of Environment. 101:82-94

Riegl, B., R.P. Moyer, L.J. Morris, R.W. Virnstein, S.J. Purkis. 2005. Distribution and seasonal biomass of drift macroalgae in the Indian River Lagoon (Florida, USA) estimated with acoustic seafloor classification (QTCView, Echoplus). Journal of Experimental Marine Biology and Ecology 326:89-104.

Keck J., R.S. Houston, S.J. Purkis, B. Riegl. 2005. Unexpectedly high cover of Acropora cervicornis on offshore reefs in Roatn (Honduras). Coral Reefs 24:509.

Purkis SJ, Riegl B, Andréfouët S. 2005. Remote sensing of geomorphology and facies patterns on a modern carbonate ramp (Arabian Gulf, Dubai, U.A.E.). Journal of Sedimentary Research. 75:861-876

Purkis SJ (2005) A ‘reef-up’ approach to classifying coral habitats from IKONOS imagery. IEEE Transactions on Geoscience and Remote Sensing 43:1375-1390

Purkis SJ, Riegl B (2005) Spatial and temporal dynamics of Arabian Gulf coral assemblages quantified from remote-sensing and in situ monitoring data. Marine Ecology Progress Series 287:99-113

Riegl B, Purkis SJ (2005) Detection of shallow subtidal corals from IKONOS satellite and QTC View (50, 200 kHz) single-beam sonar data (Arabian Gulf; Dubai, UAE). Remote Sensing of Environment 95:96-114

Purkis SJ, Pasterkamp J (2004) Integrating in situ reef-top reflectance spectra with Landsat TM imagery to aid shallow-tropical benthic habitat mapping. Coral Reefs 23:5-20

Purkis SJ, Kenter JAM, Oikonomou EK, Robinson IS (2002) High-resolution ground verification, cluster analysis and optical model of reef substrate coverage on Landsat TM imagery (Red Sea, Egypt). International Journal of Remote Sensing 23:1677-1698

Ph.D. Thesis:

Purkis SJ (2004) Calibration of satellite images of reef environments. Ph.D. Thesis, Vrije Universiteit, Amsterdam, 205 pp. ISBN 90-9018043-5

Ocean Drilling publications [ODP]:

Purkis SJ, Kenter JAM (2003) ESF Consortium for Ocean Drilling (ECOD) White Paper - a summary of European accomplishments at the close of the Ocean Drilling Program (ODP). European Science Foundation ISBN 2-912049-39-3. 188pp

Conference proceedings:

Purkis SJ (in press) Fractal patterns of coral communities: evidence from remote sensing. Proceedings of the 10th International Coral reef Symposium, Okinawa, Japan. July 2004

Selected abstracts:

Purkis SJ, Riegl BM, L R Hernández-Cruz, R Dodge (2005) Spatial patterns in coral communities as an indication of ecosystem status. Abstracts volume of the ASLO Summer Meeting, June 19-24, 2005 Santiago de Compostela, Spain

Purkis SJ, Riegl BM, Dodge R (2005) Multi-site evaluation of the potential for optical-acoustic remote sensing of coral habitats. Abstracts volume of the Eighth International Conference on Remote Sensing for Marine and Coastal Environments, 17-19 May 2005 Halifax, Nova Scotia, Canada

Purkis SJ, Pasterkamp R, Kenter JAM (2002) Regional scale mapping of Red Sea coral reef tops using Landsat TM, a precursor to temporal analysis. Abstracts volume of the Seventh International Conference on Remote Sensing for Marine and Coastal Environments, 20-22 May 2002 Miami, Florida, USA

Purkis SJ, Kenter JAM (2002) Classification, accuracy assessment and utility of reef-top benthic habitat maps derived from Landsat data of the Egyptian Red Sea. Abstracts volume of the ISRS European Meeting, 4-7 Sept. Cambridge, England, P78

Purkis SJ (1998) Cluster analysis methods in determining coral reef substrate coverage on Landsat TM imagery calibrated by in situ measurements. Challenger Society‘s UK Oceanography ’98 Abstracts, P211

REHAGE, JENNIFER, Ph.D., Assistant Professor

Publications

Rehage, J.S. and W.F. Loftus. Seasonal fish community variation in mangrove creeks in the southwestern Everglades: an examination of their role as dry-down refuges. Bulletin of Marine Science. Accepted pending revisions.

Rehage, J.S. and J.C. Trexler. 2006. Assessing the net effect of anthropogenic disturbance on aquatic communities in wetlands: Community structure relative to distance from canals. Hydrobiologia 569:359-373.

Rehage, J.S., B.K. Barnett, and A. Sih. 2005. Foraging behavior and invasiveness: Do invasive Gambusia exhibit higher feeding rates and broader diets than their non-invasive relatives? Ecology of Freshwater Fish 14: 352-360.

Rehage, J.S., B.K. Barnett, and A. Sih. 2005. Behavioral responses to a novel predator and competitor of invasive mosquitofish and their non-invasive relatives (Gambusia sp.). Behavioral Ecology and Sociobiology 57: 256-266.

Rehage, J.S. and A. Sih. 2004. Dispersal behavior, boldness and the link to invasiveness: A comparison of four Gambusia species. Biological Invasions 6: 379-391.

Rehage, J.S., S.G. Lynn, J.I. Hammond, B.D. Palmer, and A. Sih. 2002. Effects of larval exposure to Triphenyltin on the survival, growth, and behavior of larval and juvenile Ambystoma barbouri. Environmental Toxicology and Chemistry 21: 807-815.

RIEGL, BERNHARD, Ph.D., Professor

Publications

Riegl B, Bruckner A, Coles S, Renaud P, Dodge RE (2009) Coral Reefs - Threats and conservation in an era of global change. Annals of the New York Academy of Science 1162: 136-186.

Riegl B, Purkis SJ, Keck J, Rowlands GP (2009) Monitored and modeled coral population dynamics and the refuge concept. Marine Pollution Bulletin 58:24-38.

Glynn PW, Riegl B, Romanski AM, Baums IM (2009) Rapid recovery of a coral reef on Darwin Island. Galapagos Research 66: 6-16. Riegl B, Purkis SJ (2009) Model of coral population response to accelerated bleaching and mass mortality in a changing climate. Ecological Modelling 220: 192-208.

Riegl B, Purkis SJ (2009) Markov models for linking facies in space and time (Arabian Gulf, Miocene Paratethys) in: Swart P, McKenzie J (eds) Perspectives in Sedimentary Geology: A Tribute to the Career of Robert Nathan Ginsburg, International Association of Sedimentologists, Special Publication 40, 337-360

Baker AC, Glynn PW, Riegl B (2008) Climate change and coral reef bleaching: an ecological assessment of long-term impacts, recovery trends and future outlook. Estuarine, Coastal and Shelf Science 80:435-471

Rowlands G, Purkis SJ, Riegl B (2008) The 2005 coral-bleaching event Roatan (Honduras): Use of pseudo-invariant features (PIFs) in satellite assessments. Journal of Spatial Science 53(1): 99-113

Purkis SJ, Graham NAJ, Riegl B (2008) Predictability of reef fish diversity and abundance using remote sensing data in Diego Garcia (Chagos Archipelago). Coral Reefs 27:167-178

Riegl B, Moyer R, Dodge RE, Kohler K, Walker B, Gilliam D (2008) A tale of storms, bombs, and germs: Geomorphology and coral assemblage structure at Vieques (Puerto Rico) and St. Croix (U.S. Virgin Islands). Journal of Coastal Research

Walker B, Riegl B, Dodge RE (2008) Mapping coral reef habitats in southeast Florida using a combined-technique approach. Journal of Coastal Research

Riegl B, Dodge RE (2008) Introduction: A diversity of oceans, reefs, people, and ideas: a perspective of US coral research. In:

Riegl B, Dodge RE (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 1-9

Riegl B, Purkis SJ, Houk P, Cabrera G, Dodge RE (2008) Geologic setting and geomorphology of coral reefs in the Mariana Islands (Guam and Commonwealth of the Northern Mariana Islands). In: Riegl B, Dodge RE (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 687-714

Banks KE, Riegl BM, Richards VP, Walker BE, Helmle KP, Jordan LKB, Phipps J, Shivji M, Spieler RE, Dodge RE (2008) The reef tract of continental Southeast Florida (Miami-Dade, Broward, and Palm Beach Countoes, USA). In: Riegl B, Dodge RE (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 125-172

Birkeland C, Craig P, Fenner D, Smith L, Kiene WE, Riegl BM (2008) Geologic setting and ecologic functioning of coral reefs in American Samoa. In: Riegl B, Dodge RE (eds) Coral Reefs of the USA. Springer-Verlag, Dordrecht, 737-762

Glynn PW, Wellington GM, Riegl B, Olson DB, Bornemann E, Wieters EA (2007) Diversity and biogeography of the scleractinian coral fauna of Easter Island (Rapa Nui). Pacific Science 61(1): 67-90.

Riegl B, Halfar J, Purkis SJ, Godinez-Orta L (2007) Sedimentary facies of the Eastern Pacific's northernmost reef-like setting (Cabo Pulmo, Mexico). Marine Geology 236: 61-77.

Purkis, S.J., K.E. Kohler, B.M. Riegl, S.O. Rohmann. 2007. The Statistics of Natural Shapes in Modern Coral Reef Landscapes. Journal of Geology 115:493-508.

Jameson SC, Ammar MSA, Saadalla E, Mostafa HM, Riegl B (2007) A Quantitative Ecological Assessment of Diving Sites in the Egyptian Red Sea During a Period of Severe Anchor Damage: A Baseline for Restoration and Sustainable Tourism Management. Journal of Sustainable Tourism 15(3): 309-322

Banks KW, Riegl BM, Shinn EA, Piller WE, Dodge RE (2007) Geomorphology of the southeast Florida continental reef tract (Miami-Dade, Broward, and Palm Beach Counties, USA). Coral Reefs 26: 617-640.

Riegl B (2007) Extreme climatic events and coral reefs: how much short-term threat from global change? In: Aronson R (ed) Geological approaches to coral reef ecology. Springer-Verlag, Berlin: 315-341

Halfar J, Strasser M, Riegl B, Godinez-Orta L (2006) Oceanography, sedimentology and acoustic mapping of a bryomol carbonate factory in the northern Gulf of California, Mexico. in: Pedley H.M, Carrannante, G., (Eds.) Cool-Water Carbonates: Depositional Systems and Palaeoenvironmental control. Geological Society, London, Special Publications, 255, 199-217.

Hetzinger, J, Halfar, J., Riegl, B., Godinez-Orta, L. (2006) Sedimentology and acoustic mapping of modern rhodolith beds on a non-tropical carbonate shelf (Gulf of California, Mexico). Journal of Sedimentary Research 76: 670-682.

Purkis SJ, Myint S, Riegl B (2006) Enhanced detection of the coral Acropora cervicornis using a contextural classifier. Remote Sensing of Environment 101: 82-94.

Rankey, E.C., Riegl, B., Steffen, K. (2006) Form, function and feedback in a tidally dominated ooid shoal, Bahamas. Sedimentology 53: 1191-1210.

Hernandez-Cruz LR, Purkis S, Riegl B (2006) Documenting decadal spatial changes in seagrass and Acropora palmata cover by aerial photography analysis in Vieques, Puerto Rico: 1937-2000. Bulletin of Marine Science 79(2): 401-414.

Vargas-Angel B, Riegl B, Gilliam D, Dodge RE (2006) An experimental histopathological rating scale of sediment stress in the Caribbean coral Montastrea cavernosa. Proceedings of the 10th International Coral Reef Symposium, Okinawa: 1168-1173.

Riegl B, Purkis SJ, Kohle K, Dodge RE (2006) Spatial patterns in Arabian Gulf coral assemblages (Jebel Ali, Dubai, U.A.E.) in response to temperature forcing. Proceedings of the 10th International Coral Reef Symposium, Okinawa: 683-687.

Purkis SJ, Riegl B, Dodge RE (2005) Fractal patterns of coral communities: evidence from remote sensing (Arabian Gulf, Dubai, UAE). Proc 10th Int Coral Reef Symp Okinawa, Japan June 28-July 2, 2004, 1753-1762.

Riegl B, Moyer RP, Morris LJ, Virnstein R, Purkis SJ (2005) Distribution and seasonal biomass of drift macroalgae in the Indian River Lagoon (Florida, USA) estimated with acoustic seafloor classification (QTCView, Echoplus). Journal of Experimental Marine Biology and Ecology 326: 89-104.

Purkis SJ, Riegl B, Andréfouët S (2005) Remote sensing of geomorphology and facies patterns on a modern carbonate ramp (Arabian Gulf U.A.E.) Journal of Sedimentary Research 75: 861-876.

Halfar J, Godinez-Orta L, Riegl B, Valdez-Holguin JE, Borges JM (2005) Living on the edge: high-latitude Porites carbonate production under temperate eutrophic conditions. Coral Reefs 24: 582-592.

Renegar DA, Riegl B (2005) Effect of nutrient enrichment and elevated CO2 partial pressure on growth rate of the Atlantic zooxanthellate coral Acropora cervicornis. Marine Ecology Progress Series 293: 69-75.

Moyer RP, Riegl B, Banks K, Dodge RE (2005) Assessing the accuracy of acoustic seabed classification for mapping coral reef environments in South Florida (Broward County, USA). Revista de Biologia Tropical (Suppl. 1): 175-184.

Riegl B, Moyer RP, Morris L, Virnstein R, Dodge RE (2005) Determination of the distribution of shallow-water sea grass and drift algae communities with acoustic seafloor discrimination. Revista de Biologia Tropical 53 (Suppl. 1): 165-174.

Riegl B, Purkis SJ (2005) Detection of shallow subtidal corals from IKONOS satellite and QTC View (50, 200 kHz) single-beam sonar data (Arabian Gulf; Dubai, UAE). Remote Sensing of Environment 95: 96-114

Purkis SJ, Riegl B (2005) Spatial and temporal dynamics of Arabian Gulf coral assemblages quantified from remote-sensing and in situ monitoring data (Jebel Ali, Dubai, U.A.E.). Marine Ecology Progress Series 287:99-113. Andréfouët S, Riegl B (2004) Remote sensing: a key tool for interdisciplinary assessment of coral reef processes. Coral Reefs 23(1): 1-4

Rezai H, Wilson S, Claereboudt M, Riegl B (2004) Coral reef status in the ROPME sea area: Arabian/Persian Gulf, Gulf of Oman and Arabian Sea. In: Wilkinson C (ed) Status of Coral Reefs of the World: 2004. Australian Institute of Marine Science, Townsville: 155-170.

Andréfouët S, Kramer P, Torres-Pulliza D, Joyce KE, Hochberg EJ, Garza-Pérez R, Mumby PJ, Riegl B, Yamano H, White WH, Zubia M, Brock JC, Phinn SR, Naseer A, Hatcher BG, Muller-Karger FE (2004) Multi-site evaluation of IKONOS data for classification of tropical coral reef environments. Remote Sensing of Environment

R.P. Moyer, B. Riegl, K. Banks, R.E. Dodge (2003) Spatial patterns and ecology of benthic communities on a high-latitude South Florida (Broward County, USA) reef system. Coral Reefs (2003) 22: 447–464

Manfrino C, Riegl B, Hall JL, Graifman R (2003) Status of coral reefs of Little Cayman, Grand Cayman and Cayman Brac, British West Indies, in 1999 and 2000 (Part 1: stony corals and algae). Atoll Research Bulletin 496: 204-225.

Hoshino K, Brandt M, Manfrino C, Steiner SCC, Riegl B (2003) Assessment of the coral reefs of the Turks and Caicos Islands (Part 2: Fish). Atoll Research Bulletin 496: 480-499

Riegl B, Manfrino C, Hermoyian C, Brandt M, Hoshino K (2003) Assessment of the coral reefs of the Turks and Caicos Islands (Part 1: Stony corals and algae). Atoll Research Bulletin 496: 460-479.

Riegl B (2003) Global climate change and coral reefs: different effects in two high latitude areas (Arabian Gulf, South Africa). Coral Reefs 22(3):

Piller WE, Riegl B (2003) Vertical versus horizontal growth strategies of coral frameworks. International Journal of Earth Science 92(4):511-519

Riegl B, Piller WE (2003) Possible refugia for reefs in times of environmental stress. International Journal of Earth Science 92(4):520-531

Riegl B, Antonius A (2003) Halofolliculina skeleton eroding band (SEB): a coral disease with fossilization potential? Coral Reefs 22(1): 48

Riegl B, Piller WE (2002) Upwelling areas as possible refugia in times of rising SST? Further evidence from the Caribbean and Indian Oceans. Proceedings of the 9th International Coral Reef Symposium, Bali, Volume 1: 315-320

Riegl B, Piller WE (2002) Reefs and coral carpets in the Miocene Paratethys (Badenian, Leitha Limestone, Austria). Proceedings of the 9th International Coral Reef Symposium, Bali, Volume 1: 211-216

Riegl B (2002) Phoenix from the ashes? Repetitive mass mortality and the biogeology of southern Arabian Gulf (United Arab Emirates) coral systems. In Bright M, Dworschak PC, Stachowitsch M (eds) The Vienna Scool of Marine Biology. A Tribute to Joerg Ott. Facultas, Vienna: 137-159

Riegl B, Moyer RP, Andrefouet S (2002) Integration of satellite remote-sensing of subtidal habitats with vessel-based video survey (Dubai, UAE, Arabian Gulf). Proceedings of the 7th International Conference on Remote-Sensing in Coastal and Marine Habitats, Miami (on CD)

Moyer RP, Riegl B, Dodge RE, Walker BK, Gilliam D (2002) Acoustic remote-sensing of reef benthos in Broward County, Florida (USA). Proceedings of the 7th International Conference on Remote-Sensing in Coastal and Marine Habitats, Miami (on CD)

Walker BK, Riegl B, Dodge RE, Moyer RP (2002) Integration of remotely-sensed optical and acoustic data for the delineation of reef-lines in Broward County, Florida (USA). Proceedings of the 7th International Conference on Remote-Sensing in Coastal and Marine Habitats, Miami (on CD)

Hubmann, B., Piller W.E. & B. Riegl (2002) Functional morphology of coral shape and passive hydrodynamic self-righting in Recent Manicinia areolata. Senckenbergiana lethaea 82(1): 125-130

Rasser, M. & Riegl, B. (2002) Holocene coral reef rubble and its binding agents. Coral Reefs 21(1): 57-72.

Riegl, B. (2002) Effects of the 1996 and 1998 positive sea-surface temperature anomalies on corals, coral diseases and fish in the Arabian Gulf (Dubai, UAE). Marine Biology140: 29-40

Kirschner AKT, Riegl B, Velimirov B (2001) Degradation of emergent and submerged macrophytes in an oxbow lake of an embanked backwater system: implications for the terrestrialization process. International Revue of Hydrobiology 86(4-5): 555-571

Riegl, B. & W.E. Piller (2001) Cryptic tissues inside Acropora frameworks: a mechanism to enhance in tissue survival in hard times while also enhancing framework density. Coral Reefs 5(1): 67-68

Hubmann, B., W.E Piller,. & B. Riegl (2001) Manicina areolata (Linne 1758) a coral with relevant palecological strategies. Geologica Saxonica 46/47: 181-187.

Riegl, B. (2001) Inhibition of reef framework by frequent disturbance: examples from the Arabian Gulf, South Africa, and the Cayman Islands. Palaeogeography, Palaeoclimatology, Palaeoecology 175(1-1): 79-102

Riegl, B. & J. Schaffelner (2001) Soft coral mimesis by an aeolidiid nudibranch. Coral Reefs 19(5): 66

Riegl, B. (2001) Degradation of reef structure, coral and fish communities in the Red Sea by ship groundings and dynamite fisheries. Bulletin of Marine Science 69(2): 595-611.

Riegl, B. (2000) Aspects of the biogeology and environmental geology of Cenozoic coral reefs. Habilitationsschrift, Karl-Franzens-Universität Graz, 1-192.

Riegl, B. & W.E. Piller (2000) Biostromal coral facies - a Miocene example from the Leitha Limestone (Austria) and its actualistic interpretation. Palaios 15: 399-413.

Riegl, B., J.L. Korrubel and C. Martin. 2001. Mapping and monitoring of coral communities and their spatial patterns using a surface-based video method from a vessel. Bulletin of Marine Science 69(2): 869-880.

Riegl, B. & W.E. Piller (2000)Reefs and coral carpets in the northern Red Sea as models for organism - environment feedback in coral communities and its reflection in growth fabrics. In: Insalaco E., Skelton P.W., Palmer T.J. (eds). Carbonate platform systems: components and interactions. Geological Society Special Publication 178: 71-88.

Riegl, B. & Piller, W. E. (2000). Benthos-mapping: applications in environmental geology and resource management (Red Sea, Egypt). Journal of African Earth Sciences 30 (4A): 74-75.

Riegl, B. & W.E. Piller (2000) Mapping of reefs and associated biota in northern Safaga Bay (Red Sea, Egypt): a tool for proactive management. Aquatic Conservation: Marine and Freshwater Ecosystems 10: 127-140.

Riegl, B. & W.E. Piller (1999) Coral frameworks revisited: reefs and coral carpets in the northern Red Sea. Coral Reefs 18(3): 241-254.

Jameson, S.C., M.S.A. Ammar, E. Saadalla, H.M. Mostafa, & B. Riegl (1999) A coral damage index and its application to diving sites in the Egyptian Red Sea. Coral Reefs 18(4): 333-340.

Riegl, B. (1999) Coral communities in a non-reef setting in the southern Arabian Gulf (Dubai, UAE): fauna and community structure in response to recurrent mass mortality. Coral Reefs 18(1): 63-73.

Riegl, B. & K.E. Luke (1998) Ecological characteristics of dynamited reefs in the northern Red Sea and their relevance to reef rehabilitation. Marine Pollution Bulletin 37(8-12): 488-498.

Riegl, B. (1998) A new reef marine reserve in the southern Arabian Gulf: Jebel Ali, Dubai (UAE). Coral Reefs 17(4): 398.

Antonius A. & B. Riegl (1998) Coral diseases and Drupella cornus invasion in the northern Red Sea. Coral Reefs 17(1): 84.

Korrubel, J. & B. Riegl (1998) A new coral disease from the Arabian Gulf. Coral Reefs 17(1): 35.

Antonius, A. & B. Riegl (1997) A possible link between coral diseases and a corallivorous snail (Drupella cornus) outbreak in the Red Sea. Atoll Research Bulletin 48: 1-12.

Riegl, B. & W.E. Piller (1997) Distribution and environmental control of coral associations in northern Safaga Bay, Red Sea, Egypt. Facies 36: 141-162, pls 38-45.

Riegl, B. & A. Riegl (1996) Studies on coral community structure as basis for marine reserve zonation. Biological Conservation 77 (2-3): 269-277.

Riegl, B., C. Heine & G.M. Branch (1996) The function of funnel-shaped coral-growth in a high-sedimentation environment. Marine Ecology Progress Series 145: 87-94.

Riegl, B. & A. Riegl (1996) How episodic coral breakage can determine community structure: a South African coral reef example. P.S.Z.N.I. Marine Ecology 17 (1-3): 399-410.

Riegl, B., W.E. Piller & M. Rasser (1996) Rolling stones: first record of an Acropora anthocercis (Brook) corallith from the northern Red Sea. Coral Reefs 15(3):149-150.

Riegl, B. (1996) Corals of the South-west Indian Ocean IV. The hard coral family Faviidae Gregory, 1900 (Scleractinia:Faviina). Investigational Reports of the Oceanographic Research Institute, Durban, No 70: 1-47.

Riegl, B. (1996) The hermatypic coral fauna of subtropical South-East Africa - a check-list. Pacific Science 50(4): 404-414.

Riegl, B. & P.A. Cook. (1995) Is coral community structure linked to damage susceptibility? A case study from South Africa. Beiträge zur Paläontologie 20, Proceedings of the 1st European Regional Meeting of the International Society for Reef Studies: 51-63.

Riegl, B. & J.P. Bloomer (1995) Tissue damage in scleractinian and alcyonacean corals due to experimental exposure to sedimentation. Beiträge zur Paläontologie 20, Proceedings of the 1st. European Regional Meeting of the International Society for Reef Studies: 65-73.

Riegl, B. & G.M. Branch. (1995) Effects of sediments on the energy budgets of four scleractinian (Bourne, 1900) and five alcyonacean (Lamouroux, 1816) corals. Journal of Experimental Marine Biology and Ecology 186: 259-275.

Riegl, B. (1995) Effects of sand deposition on scleractinian and alcyonacean corals. Marine Biology 121(3): 517-526.

Riegl, B., M.H. Schleyer, P.J. Cook & G.M. Branch (1995) The structure of Africa's southernmost reef coral communities. Bulletin of Marine Science 56(2): 676-691.

Riegl, B. (1995) A revision of the hard coral genus Acropora Oken, 1815 (Scleractinia: Astrocoeniina: Acroporidae) in South East Africa. Zoological Journal of the Linnean Society 113: 249-288.

Riegl, B. (1995) Description of four new species in the hard coral genus Acropora Oken, 1815 (Scleractinia: Astrocoeniina: Acroporidae) from South East Africa. Zoological Journal of the Linnean Society 113: 229-247.

Riegl, B. & B. Velimirov (1994) The structure of coral communities at Hurghada in the northern Red Sea. P.S.Z.N.I. Marine Ecology 15(3/4): 213-233.

Riegl, B. (1993) Taxonomy and ecology of South African reef corals. PhD thesis, University of Cape Town: I-VI, 1-494.

Riegl, B. & B. Velimirov (1991) How many damaged corals in Red Sea reef systems? A quantitative survey. Hydrobiologia 216/217: 249-256.

Riegl, B. (1989) Gesellschaftsstruktur von Steinkorallen (Scleractinia) an Riffen des nördlichen Roten Meeres. MSc thesis, University of Vienna: 1-116.

Abstracts

Riegl B, Moyer RP, Morris L, Virnstein R, Dodge RE, Macintosh G (2003) Determination of the distribution of shallow-water segrass and drift algae communities with acoustic remote sensing. 31st Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Port of Spain:72

Moyer RP, Riegl B, Dodge RE (2003) Accuracy assessment of acoustic remote-sensing data from a South Florida (Broward County, USA) coral reef system. 31st Scientific Meeting of the Association of Marine Laboratories of the Caribbean, Port of Spain:135

Moyer RP, Riegl B (2002) Determination of different benthic reef communities in Broward County, Florida (USA) using acoustic remote-sensing and in situ techniques. International Society of Reef Studies, European Meeting, Cambridge UK: 81

Riegl B (2002) Extreme climatic events and high-latitude reef-building: what consequences from global climatic change? International Society of Reef Studies, European Meeting, Cambridge UK: 81

Clayton T, Brock J, Currie R, Boss E, Riegl B, Macintosh G, Dodge RE (2002) Remote sensing for coral reef studies: testing the waters at Biscayne National Park. Proceedings of the 2002 Annual Meeting of the Geological Society of America: 200-10

Riegl B, Piller WE, An E, Fairbanks R, Dodge RE, Coulson RE (2002) Geobiotech: Multiplatform investigations into the history, geological and biological consequences of reef building in Broward County (FL, USA). Proceedings of the 2002 Annual Meeting of the Geological Society of America: 119-1

Dodge RE, Walker BK, Riegl B, Moyer RP (2002) Mapping of drowned reefs in Broward County, Florida (USA) by remotely sensed optical and acoustic data. American Geophysical Union, Oceans 2002, Hawaii

Moyer RP, Riegl B, Dodge RE, Walker BK (2002) Acoustic detection of different types of reef benthos in Broward County, Florida (USA). American Geophysical Union, Oceans 2002, Hawaii

Riegl B, Moyer R, Andrefouet S, Dodge RE (2002) Carbonate facies off Dubai, Arabian Gulf: remote-sensing of Ikonos satellite images and ground-truthing by vessel-based video survey. American Geophysical Union, Oceans 2002, Hawaii

Piller WE, Riegl B. (2001) Upwelling and topography - protection mechanisms for reef biota under stress. GSA annual meeting Boston.

Riegl, B. & Piller, W.E. (2001) Upwelling areas and coral carpets: possible refugia for reef biota during times of global warming. ). Schriftenreihe der Deutschen Geologischen Gesellschaft 14: 166-167

Piller, W.E. & Riegl, B. (2001) Initiation, termination - what next? Resilience of a biostromal coral framework (Bali, Indonesia). Schriftenreihe der Deutschen Geologischen Gesellschaft 14: 152

Greiss M, Riegl B, Piller WE (2000) Taphonomische Veraenderung and Korallenskeletten nach einem Massensterben im Arabischen Golf. Sedimentologentreffen, Leoben

Greiss, M. & B. Riegl (2000) Taphonomic alteration of branching coral skeletons following a mass mortality event in the Arabian Gulf. 9th International Coral Reef Symposium, Bali: 254

Riegl, B. & W.E. Piller (2000) Small-scale upwelling as a control for reef heath and frameworks. Preliminary findings from the Bahamas and the Arabian Sea. 9th International Coral Reef Symposium, Bali: 77

Riegl, B. (2000) Ecological and framebuilding consequences of the 1996 coral mass mortality event in the Arabian Gulf (Dubai, UAE). 9th International Coral Reef Symposium, Bali: 265

Piller, W.E., B. Hubmann, & B. Riegl (2000) Hydrodynamic self-righting in Manicina areolata, a strategy with palecological significance. 9th International Coral Reef Symposium, Bali: 51

Riegl, B. & Piller W. E. (2000) Miocene biostromal coral facies (Leitha Limestone, Austria) - low diversity coral carpets and their actualistic interpretation. 9th International Coral Reef Symposium, Bali: 52

Riegl, B. & W. E. Piller (2000) Coral framestone switch-on and switch-off sequences - indicators for thermal instability in a peripheral Paratethyan ocean basin (Eisenstadt basin, Austria)? 31stInternational Geological Conference, Rio de Janeiro (Abstract on CD).

Piller, W.E. & B. Riegl. (2000) Reefs and upwelling - two incompatible systems? Mitteilungen der Gesellschaft der Geoogie und. Bergbau Studenten

Hubmann, B., W.E. Piller & B. Riegl (2000) Manicina areaolata (LINNÉ 1758), ein Schlüssel zum Verständnis fossiler "solitärer" Korallen? Schriften des Staatlichen Museums für Mineralolgie und Geologie zu Dresden 11: 80

Manfrino C, Riegl B, Pattengill-Semmens CV, Hall JL, Semmens B, Hoshino K, Graifman R, Hermoyian C (2000) Status of reefs in the Cayman Islands. 9th International Coral Reef Symposium, Bali: 359

Hoshino K, Manfrino C, Riegl B, Steiner SCC (2000) Status of fish communities in the Turks and Caicos Islands: results from the Atlantic and Gulf Rapid Reef Assessment. 9th International Coral Reef Symposium, Bali: 357

Hoshino K, Manfrino C, Riegl B (2000) Gorgonian and scleractinian coral communities of the Turks and Caicos Islands. 9th International Coral Reef Symposium, Bali: 311

Manfrino C, Riegl B, Hoshino K, Steiner SCC (2000) Status of reefs in the Turks, Caicos and Mouchoir banks. 9th International Coral Reef Symposium, Bali: 236

Ginsburg RN, Alcolado P, Arias E, Bruckner A, Claro R, Curran A, Deschamps A, Fonseca A, Feingold J, Garcia-Saez C, Gilliam D, Gittings S, Glasspool A, Horta-Puga G, Klomp K, Kramer PA, Kramer PR, Leao Z, Lang J, Manfrino C, Nemeth R, Pattengill-Semmens C, Peckol P, Posada J, Riegl B, Robinson J, Sale P, Steneck R, Vargaz J, Villamizar E (2000) Status of Caribbean reefs: initial results from the Atlantic and Gulf Rapid Reef Assessment. 9th International Coral Reef Symposium, Bali: 211

Riegl, B. (1999) Recurrent coral mass mortality explains absence of framework in an area with rich coral growth (recent Arabian Gulf. in: Camoin GF, Dullo WC (eds) Paleoceanology of reefs and carbonate platforms: Miocene to modern. Abstract book. Publication ASF No. 32: 181

Riegl, B. & W. E. Piller, (1999) Influence of bottom topography and coral community structure on framework production: reefs and coral carpets in the northern Red Sea. Lyell Meeting: Organism-Environment feedback in carbonate platforms and reefs: 22

Riegl, B. and P. Kramer (1999) Rapid, large-scale reef surveys for monitoring and management: lessons from the Indian Ocean and the Bahamas. In: Thomas, J.D., Dodge, R. (eds) Scientific Aspects of Coral Reef Assessment, Monitoring and Restoration, Abstract Book, National Coral Reef Institute: 163

Riegl, B. (1999) Patterns in reef structure, coral and fish communities, and their degradation in the Red Sea - implications for management and restoration. In: Thomas, J.D., Dodge, R. (eds) Scientific Aspects of Coral Reef Assessment, Monitoring and Restoration, Abstract Book, National Coral Reef Institute: 162

Riegl, B & K.E. Luke (1998) Rapid Ecological Assessment (REA) protocol for reef quality assessment in the northern Red Sea. 1st AGRA Workshop, RSMAS Miami

Riegl, B. & W.E. Piller (1998) Reef mapping, monitoring, and sensitivity analysis in the northern Red Sea (Safaga Bay, Ras Banas, Egypt) and the Arabian Gulf (Dubai, UAE). 1st AGRA Workshop, RSMAS Miami

Riegl, B. (1998) Developers, divers, dynamite: man-made changes and an uncertain future for Red Sea coral reefs. American Zoologist 37(5): 12A

Riegl, B. & W.E. Piller (1997) Corallite variability in recent Porites: implications for fossil identification. Boletin de la Real Sociedad de Espana (Historia Natural), Proceedings of the 6th International Conference on fossil Cnidaria and Porifera: Vol.91 (1-4): 305-316.1. Riegl, B. (1994) The hermatypic coral fauna of subtropical south-east Africa. Publications du Service Geologique du Luxembourg, Vol XXIX. Proceedings of the 2nd. European Regional Meeting of the International Society for Reef Studies: 15

Riegl, B. & W.E. Piller (1996) Sediment transport in northern Safaga Bay (Red Sea, Egypt) as a mechanism for coral community differentiation. 8th International Coral Reef Symposium, Panama:165

Riegl, B. (1996) Corals and sediment: mechanisms of interference. 8th International Coral Reef Symposium, Panama: 165

Riegl, B. (1995) Paleo-ecological implications of coral shape. 6th Int. Conf. Coeleneterate Biology, Noordwijkerhout: 82

Riegl, B. (1995) Is coral shape a reliable paleo-environmental indicator? 7th Int. Symposium on Fossil Cnidaria and Porifera, Madrid: 71

Riegl, B. & W.E. Piller (1995) Within-colony variability of calyx characteristics. Porites cf. lutea Edwards & Haime, 1860 from the Red Sea. 6th Int. Conerence on Coeleneterate Biology, Noordwijkerhout: 83

Riegl, B. & W.E. Piller (1995) Variability of calyx characteristics in Recent Porites: implications for fossil identification. 7th Int. Symposium on Fossil Cnidaria and Porifera, Madrid: 72

Riegl, B. & A. Riegl (1994) Coral breakage on reefs - a problem for management? Publications du Service Geologique du Luxembourg, Vol XXIX. Proceedings of the 2nd. European Regional Meeting of the International Society for Reef Studies: 241

Riegl, B. & A. Riegl (1994) How episodic coral breakage can determine community structure: a South African coral reef example. 29th European Marine Biology Symposium, Vienna: 41

Riegl. B., & J.P. Bloomer (1993) Tissue damage in hard and soft corals due to experimental exposure to long-term sedimentation: preliminary results. 1st European Regional Meeting of the International Society for Reef Studies. Vienna: 53

Riegl, B. & P.A. Cook (1993) Conservation status and management of South African coral reefs. 1st European Regional Meeting of the International Society for Reef Studies. Vienna: 54

Odendaal FJ, C. Kremen, V. Ramafimahatratra, P.A.R. Hockey & B. Riegl (1993) Marine exploitation on the Masoala peninsula, Madagascar: the status of reefs and lagoons and potential solutions. Proceedings of the. 8th South African Maine Science Symposium

Schleyer M.H., A. Kruger, B. Riegl & Y. Benayahu (1993) Natal coral reefs: a case for monitoring climate change. Proeedings of the. 8th South African Maine Science Symposium

ROGERSON, ANDREW, Ph.D., Professor

Publications

Dobbs, F.C. and A. Rogerson. 2005. Can we ever remove, kill, or inactivate all the microorganisms from ship's ballast water, and should we try? Environmental Science & Technology. (In press).

Hauer G. and A. Rogerson. 2005. Remarkable salinity tolerance of seven species of naked amoebae (gymnamoebae). Hydrobiologia (in press).

Maybruck, B.T. and A. Rogerson. 2005. Protozoan epibionts on the prop roots of the red mangrove tree, Rhizophora mangle. Protistology, 3: 265-272.

Hauer G. and A. Rogerson. 2005. Heterotrophic protozoa from hypersaline environments. In: Adaptation To Life at High Salt Concentrations in Archaea, Bacteria, and Eukarya, edited by Nina Gunde-Cimerman, Aharon Oren and Ana Plemenita (in press).

Booton, G.C., A. Rogerson, T.D. Bonilla, D.V. Seal, D.J. Kelly, T.K. Beattie, A. Tomlinson, F. Lares-Villa, P.A. Fuerst, and T.J. Byers. 2004. Molecular and physiological evaluation of subtropical environmental isolates of Acanthamoeba spp., causal agent of Acanthamoeba keratitis. Journal of Eukaryotic Microbiology 51: 192-200.

Rogerson, A., O.R. Anderson, and C. Vogel. 2003. Are planktonic naked amoebae predominately floc-associated or free in the water column. Journal Plankton Ecology. 25: 1359-1365.

ESIOBU, N., MOHAMMED, R., ECHVERRY, A., GREEN, M., ROGERSON, A., HARTZ, A., DAVIDIAN, T. and d. McCORQUODALE. 2003. The application of peptide nucleic acid probes for the rapid detection and enumeration of total bacteria (Eubacteria), Staphylococcus aureus and Pseudomonas aeruginosa in recreational beaches of S. Florida. Journal of Microbiological Methods, in press.

Murtagh, G.J., P.S. Dyer, A. Rogerson, G.V. Nash, and J. Laybourn-Parry. 2002. A new species of Tetramitus in the benthos of a saline antarctic lake. European Journal of Protistology 37: 437-443.

Rogerson, A. and G. Hauer. 2002. Naked amoebae (Protozoa) of the Salton Sea, California. Hydrobiologia 473:161-177.

Sims, G. R. Aitken, and A. Rogerson. 2002. Identification and phylogenetic analysis of morphologically similar naked amoebae using small subunit ribosomal RNA. Journal Eukaryotic Microbiology, 49: 478-484.

Hauer, G., A. Rogerson, and O.R. Anderson. 2001. Platyamoeba pseudovannellida N. Sp., a new naked amoeba with a wide salt tolerance, isolated from the Salton Sea , California. Journal Eukaryotic Microbiology 48: 663-669.

ROGERSON, A, and A. GOODKOV. 2001. Naked amoebae. In: European Register of Marine Species. A checklist of the marine species in Europe and a bibliography of guides to their identification. Eds. Costello, M.J., Emblow, C. and R. White. Publications Scientifiques du Museum National D'Histoire Naturelle, Paris. pp. 53-54.

ALIOTTA, J., ROGERSON, A., CAMPBELL, C.B. and M. YONGE. 2001. Electro-ionization treatments for ballast water; assessment of effectiveness against marine microbiota typical of those in ballast water. Proceeding of the International Maritime Organization Symposium, London March 2001. in press.

ROGERSON, A., HANNAH, F., HAUER, G. and COWIE, P. 2000. Numbers of naked amoebae inhabiting the intertidal zone of two geographically separate sandy beaches. Journal Marine Biological Association UK, 80: 731-732

ARMSTRONG, E., ROGERSON, A. and J.W. LEFTLEY. 2000. First recording of Nitzchia alba from UK coastal waters with notes on its growth potential. Journal Marine Biological Association UK 80: 355-356.

ROGERSON, A. and C. GWALTNEY. 2000. The numerical importance of naked amoebae in the planktonic waters of a mangrove stand in southern Florida. Journal Eukaryotic Microbiology UK 47: 235-241.

PINN, E.H., NICKELL, L.A., ROGERSON, A. and R.J.A. ATKINSON. 1999. Comparison of the mouthpart setal fringes of seven species of mud-shrimp (Crustacea: Decapoda: Thalassinidea). Journal of Natural History 33, 1461-1485.

SIMS, G.P., ROGERSON, A. and R. AITKEN. 1999. Primary and secondary structure of the small-subunit ribosomal RNA of the naked, marine amoeba Vannella anglica: phylogenetic implications. Journal of Molecular Evolution 48: 740-749.

PATTERSON, D.J., SIMPSON, A.G. B. and A. ROGERSON. 2000. Amoebae of Uncertain Affinities. In: The Illustrated Guide to the Protozoa, Second Edition. Allen Press Inc., Kansas. Pp. 804 - 827.

ROGERSON, A. and D.J. PATTERSON. 2000. The Naked Ramicristate Amoebae (Gymnamoebae). In: The Illustrated Guide to the Protozoa, Second Edition. Allen Press Inc., Lawrence, Kansas. pp.1023 - 1053.

PATTERSON, D.J., ROGERSON, A. and N. V\330RS. 2000. The Heterolobosea. In: The Illustrated Guide to the Protozoa, Second Edition. Allen Press Inc., Lawrence, Kansas. Pp. 1104 - 1111.

ARMSTRONG, E., ROGERSON, A. and J. W. LEFTLEY. 2000. The abundance of heterotrophic protozoa associated with macroalgae. Estuarine, Coastal and Shelf Science, 50: 415-424.

ARMSTRONG, E., ROGERSON, A. and J. W. LEFTLEY. 2000. Utilization of macroalgal carbon by marine protists. Aquatic Microbial Ecology 21: 49-57.

BUTLER, A. and A. ROGERSON. 2000. Naked amoebae from benthic sediments in the Clyde Sea Area, Scotland. Ophelia 53: 37-54.

HOBSON, P.R., LAMPITT, R.S., ROGERSON, A., WATSON, J., FANG, X. and E.P. KRANTZ. 2000. True three-dimensional spatial coordinates of individual plankton determined using underwater hologrammetry. Limnology and Oceanography, 45: 1167-1174.

ANDERSON, O.R. and A. ROGERSON. 1999. Naked amoebae. Article for Encyclopedia of Life Sciences, Macmillan Reference Ltd., London

ROGERSON, A. and A. DETWILER. 1999. Abundance of airborne heterotrophic protists in Rapid City, South Dakota. Atmospheric Research. 51: 35-44.

HOBSON, P.R., LAMPITT, R.S., ROGERSON, A., WATSON, J., FANG, X. and E.P. KRANTZ. 1999. True three-dimensional spatial coordinates of individual plankton determined using underwater hologrammetry. Limnology and Oceanography, submitted.

PATTERSON, D.J., SIMPSON, A.G. and A. ROGERSON. 1999. Amoebae of Uncertain Affinities. In: Illustrated Guide to the Protozoa, Edition 2. Allen Press, Kansas. In press.

ROGERSON, A. and D.J. PATTERSON. 1999. The Naked Ramicristae Amoebae (Gymnamoebae).In: Illustrated Guide to the Protozoa,Edition 2. Allen Press, Kansas. In press.

PATTERSON, D.J., ROGERSON, A. and N. VØRS. 1999. The Heterolobosea. In: Illustrated Guide to the Protozoa, Edition 2. Allen Press, Kansas. In press.

PINN, E.H., ATKINSON, R.J.A. and A. ROGERSON. 1998. Sexual dimorphism and intersexuality in Upogebia stellata (Crustacea: Decapoda: Thalassinidea). Journal of the Marine Biological Association UK. Submitted.

PINN, E.H., ATKINSON, R.J.A. and A. ROGERSON. 1998. The diet of two mud-shrimps, Calocaris macandreae and Upogebia stellata (Crustacea: Decapoda: Thalassinidea). Ophelia 48: 211-233.

PINN, E.H., NICKELL, L.A., ROGERSON, A. and R.J.A. ATKINSON.1998. A comparison of the gut morphology and gut microflora of seven species of mud-shrimp (Crustacea: Decapoda: Thalassinidea). Marine Biology. In press.

PINN, E.H., R.J.A. ATKINSON and A. ROGERSON. 1998. Particle size selectivity and resource partitioning in five species of Thalassinidea (Crustacea: Decapoda). Marine Ecology Progress Series 169: 243-350.

ROGERSON, A., HANNAH, F., and O.R. ANDERSON.1998. A redescription of Rhabdamoeba marina DUNKERLY 1921, an inconspicuous marine amoeba from benthic sediments. Invertebrate Biology 117: 261-270.

ROGERSON, A., WILLIAMS, A.G. and P.C. WILSON. 1998. Utilisation of macroalgal carbohydrates by the marine amoeba Trichosphaerium sieboldi. Journal of the Marine Biological Association UK 78:733-744.

MAYES, D.F., ROGERSON, A., MARCHANT, H. and J. LAYBOURN-PARRY. 1998. Temporal abundance of naked bacterivore amoebae in coastal east Antarctica. Estuarine, Coastal and Shelf Science 46: 565-572.

ANDERSON, O.R., ROGERSON, A. and F. HANNAH. 1997. Ovulinata nom. nov., a replacement name for Ovulina. Journal of the Marine Biological Association UK 77: 1259.

AMANO, H., MIZOBATA, Y., MAEGAWA, M. and A. ROGERSON. 1997.Production of D-cysteinolic acid, a platelet anti-aggregating amino acid, from clone cultured reproductively sterile Ulva pertusa (Ulvales, Chlorophyta). Proceedings of the second Asia-Pacific Conference on Algal Biotechnology.

MAYES, D.F., ROGERSON, A., MARCHANT, H. and J. LAYBOURN-PARRY. 1997. Growth and consumption rates of bacterivorous Antarctic naked marine amoebae. Marine Ecology Progress Series 160: 101-108.

ANDERSON, O.R., ROGERSON, A. and F. HANNAH. 1997. Three new limax amoebae isolated from marine surface sediments: Vahlkampfia caledonica n.sp., Sacchamoeba marina n.sp., andHartmannella vacuolata n.sp. Journal of Eukaryotic Microbiology 44: 33-42.

BRIGGS, R.P., R.J.A. ATKINSON, M. McALISKEY and A. ROGERSON. 1997. Hisribdella homari van Beneden, 1858 on Nephrops norvegicus from the Irish Sea and Clyde Sea area. Journal of the Marine Biological Association UK 77: 557-559.

PINN, E.H., ROGERSON, A. and R.J. ATKINSON. 1997. Microbial flora associated with the digestive system of Upogebia stellata (Crustacea: Decapoda: Thalassinidea). Journal of the Marine Biological Association UK 77: 1082-1096.

HANNAH, F. and A. ROGERSON. 1997. The temporal and spatial distribution of foraminiferans in marine benthic sediments of the Clyde Seaarea, Scotland. Estuarine, Coastal and Shelf Science 44: 377-383.

HOBSON, P.R., KRANTZ, E.P., LAMPITT, R.S., ROGERSON, A. and J.WATSON. 1997. A preliminary study of the distribution of plankton using hologrammetry. Optics and Laser Technology 29: 25-33.

BUTLER, H. and A. ROGERSON. 1997. Consumption rates of six species of marine benthic naked amoebae (Gymnamoebia) from sediments in the Clyde Sea area. Journal of the Marine Biological Association 77: 989-997.

BUTLER, H. and A. ROGERSON. 1996. Growth potential, production efficiency and annual production of marine benthic amoebae (gymnamoebae) inhabiting sediments of the Clyde Sea area. Aquatic Microbial Ecology10: 123-129.

KRANTZ, E.P., WATSON, J., HOBSON, P.R., LAMPITT, R.S. and A.ROGERSON. 1996. In situ off-axis holography of marine plankton. SPIE Proceedings, San Jose, Ca.

DARBYSHIRE, J.F., ANDERSON, O.R. and A. ROGERSON. 1996.Protozoa. In: Methods for the examination of organismal diversity in soils and sediments. G.S. Hall (ed.). IUBS Methodology Series, CAB International Publishers. Pp. 79-90.

HANNAH, F., ROGERSON, A. and O.R. ANDERSON. 1996. A description of Paulinella indentata n.sp. (Filosea: Euglyphina) isolated from coastal benthic sediments. Journal of Eukaryotic Microbiology 43: 1-4.

ANDERSON, O.R., ROGERSON, A. and F. HANNAH. 1996. A description of the testate amoeba Ovulina parva gen. nov. sp. nov. from coastal marine sediments. Journal of the Marine Biological Association UK 76:851-865.

FIELD, R.H., APPLETON, P., VICKERMAN, K., ATKINSON, R.J.A., TAYLOR,A.C., ROGERSON, A., NEIL, D. and A.M. SHANKS. 1995. Mortality of Nephropsnorvegicus on the west coast of Scotland. Final report to MAFF Chief Scientists' Group, Contract CSA 2139, from the University of Glasgow and University Marine Biological Station Millport, 88pp.

BUTLER, H. and A. ROGERSON. 1995. Temporal and spatial abundance of naked amoebae (gymnamoebae) in marine benthic sediments of the Clyde Sea area, Scotland. Journal of Eukaryotic Microbiology 42:724-230.

ROGERSON, A., HANNAH, F., G. GOTHE. 1995. The grazing potential of some unusual marine benthic amoebae feeding on bacteria. European Journal of Protistology 34: 271-279.

WATSON, J., HOBSON, P.R., KRANTZ, E.P., LAMPITT, R.S. and A.ROGERSON. 1995. Holographic mensuration of suspended particles in aquatic systems. In: Applications of Optical Holography, Toshio Honda, Ed. Society of Photooptical Instrumentation Engineers (SPIE) Proceedings, 2577:191-199.

ANDERSON, O.R. and A. ROGERSON. 1995. Annual abundances and growth potential of gymnamoebae in the Hudson Estuary with comparative data from the Firth of Clyde. European Journal of Protistology 31:223-233.

CUSTODIO, M.R., IMSIECKE, G., KLAUTAU, M., BOROKEVIC, R., RINKEVICH,B., ROGERSON, A. and E.G. MULLER. 1995. Evolution of cell adhesion systems: evidence for Arg-Gly-Asp mediated adhesion in the amoeba Neoparamoeba aestuarina. Journal of Eukaryotic Microbiology 42: 721-724.

THOMASON, J.C., DAVENPORT, J. and A. ROGERSON. 1994. Antifouling performance of the embryo and eggcase of the dogfish Scyliorhinus canicula (L). Journal of the Marine Biological Association 74: 823 - 836.

HANNAH, F., ROGERSON, A. and J. LAYBOURN-PARRY. 1994. Respiration rates and biovolumes of benthic foraminiferans from the Clyde sea area. Journal of the Marine Biological Association 74: 301-312.

CRAWFORD, D.W., ROGERSON, A. and J. LAYBOURN-PARRY. 1994. Respiration of the marine amoeba Trichosphaerium sieboldi by 14C and Cartesian diver methods. Marine Ecology Progress Series 112: 135-142.

ROGERSON, A., BUTLER, G.H. and J. THOMASON. 1993. Estimation of amoeba cell volume from nuclear diameter and its application in protozoan ecology. Hydrobiologia 284: 229-234.

LAYBOURN-PARRY, J. and A. ROGERSON. 1993. Seasonal patterns of protozooplankton in Lake Windermere, England. Archives für Hydrobiologie129: 25-43.

ROGERSON, A. 1993. Parvamoeba rugata n.g., n.sp., (Gymnamoebia,Thecamoebidae): an exceptionally small marine naked amoeba. EuropeanJournal of Protistology 29: 446-452.

ROGERSON, A., HANNAH, F.J. and P.C. WILSON. 1993. Nitzschia albicostalis: an apochloritic diatom worthy of ecological consideration.Cahiers de Biologie Marine. 34: 513-522.

ROGERSON, A. and J. LAYBOURN-PARRY. 1992. Aggregate dwelling protozooplankton communities in estuaries. Archives für Hydrobiologie125: 411-422.

LAYBOURN-PARRY. J., ROGERSON, A. and D.W. CRAWFORD. 1992. Temporal patterns of protozooplankton abundance in the Clyde and Loch Striven. Estaurine, Coastal and Shelf Science 35: 533-543.

ROGERSON, A. and J. LAYBOURN-PARRY. 1992. Bacterioplankton abundance and production in the Clyde estuary, Scotland. Archives fürHydrobiologie. 126: 1-14.

ROGERSON, A., POLNE-FULLER, M. and A. GIBOR. 1992. Lectin binding sites in marine amoebae. Archives für Protistenkunde 141: 3-11.

ROGERSON, A. and J. LAYBOURN-PARRY. 1992. The abundance of marine amoebae in the water column of the Clyde estuary. Estuarine, Coastal and Shelf Science 34: 187-196.

ROGERSON, A. 1991. On the abundance of marine naked amoebae on the surfaces of five species of macroalgae. FEMS Microbiology Ecology 85:301-312.

POLNE-FULLER, M., ROGERSON, A., AMANO, H. and A. GIBOR. 1990. Digestion of seaweeds by the marine amoeba Trichosphaerium. Hydrobiologia 204/205:409-413.

LAYBOURN-PARRY, J., OLVER, J., ROGERSON, A. and P.L. DUVERGE. 1990. The temporal and spatial patterns of protozooplankton abundance in a eutrophictemperate lake. Hydrobiologia 203: 99-110.

ROGERSON, A., POLNE-FULLER, M., TRENCH, R.K. and A. GIBOR. 1989. A laboratory-induced association between the marine amoeba Trichosphaerium AM1-7 and the dinoflagellate Symbiodinium 8. Symbiosis 7: 229-241.

ROGERSON, A., FINLAY, B.J. and U. -G. BERNINGER. 1989. Sequestered chloroplasts in the freshwater ciliate, Strombidium viride (Ciliophora,Oligotrichida). Transactions of the American Microscopical Society 108:117-126.

FINLAY, B.J., ROGERSON, A. and A.C. COWLING. 1988. A beginners guide to the cultivation, isolation and identification of freshwater protozoa. CCAP Publication, Ambleside, U.K. 78 pp.

FINLAY, B.J., CLARKE, K.J., COWLING, A.C., HINDLE, R.M., ROGERSON, A. and U. -G. BERNINGER. 1988. On the abundance and distribution of protozoa and their food in a productive freshwater pond. European Journal of Protistology 23: 205-217.

ROGERSON, A. 1988. DAPI-staining for the rapid examination of nuclei and parasomes in marine gymnamoebae. Archives für Protistenkunde 135:289-298.

BOYD, R.K., DeFREITAS, A.S.W., HOYLE, J., McCULLOCH, A.W., McINNES, A.G., ROGERSON, A. and J.A. WALTERS. 1987. Glycerol 1.2-cyclic phosphate in centric diatoms - observations by 31P NMR in vivo, isolation and structural determination. Journal of Biological Chemistry 262: 12406 - 12408.

ROGERSON, A., DeFREITAS, A.S.W. and A.G. McINNES. 1987. Cytoplasmic localization of silicon in the diatom Thalassiosira pseudonana by electron spectroscopic imaging. Canadian Journal of Microbiology 33: 128-131.

ROGERSON, A., DeFREITAS, A.S.W. and A.G. McINNES. 1986. Observations on wall morphogenesis in Coscinodiscus asteromphalus (Bacillariophyceae). Transactions of the American Microscopical Society 105: 50-67.

ADERKAS von P., ROGERSON, A. and A.S.W. DeFREITAS. 1986. Silicon accumulation in fronds of the ostrich fern, Matteuccia struthiopteris. Canadian Journal of Botany 64: 696-699.

ROGERSON, A., DeFREITAS, A.S.W. and A.G. McINNES. 1986. Growth rates and ultrastructure of siliceous setae of Chaetoceros gracilis (Bacillariophyceae). Journal of Phycology 22: 56-62.

SMITH-PALMER, T., DeFREITAS, A.S.W., McINNES, A.G., ROGERSON, A., McCULLOCH, A.W. and J. McLACHLAN. 1985. A study contradicting the "luxury consumption" of silicon by the marine prasinophycean alga Platymonas. Biological Oceanography 3: 315-326.

ROGERSON, A. and A.S.W.DeFREITAS. 1984. Intracellular localization of silicon in the diatom Thalassiosira pseudonana as visualized by electron spectroscopic imaging. Transactions of the American Microscopical Society103: Abstract p. 107.

ROGERSON, A. 1983. Annual production and energy flow of the large naked amoeba population of a Sphagnum bog. Transactions of the American Microscopical Society 102: Abstract p. 85.

GATES, M.A., ROGERSON, A. and J. BERGER. 1983. Dry to wet weight biomass conversion for Tetrahymena elliottii (Ciliophora, Protozoa). Oecologia 55: 145-148.

BALDOCK, B.M., ROGERSON, A. and J. BERGER. 1983. A new species of freshwater amoeba: Amoeba algonquinensis n.sp. (Gymnamoebia: Amoebidae). Transactions of the American Microscopical Society 102: 113-121.

ROGERSON, A., SHUI, W.Y., HUANG, G.L., MACKAY, D. and J. BERGER. 1983. Determination and interpretation of hydrocarbon toxicity to ciliate protozoa. Aquatic Toxicity 3: 215-228.

ROGERSON, A. and J. BERGER. 1983. The stimulatory role of ciliates in the microbial degradation of crude petroleum. Journal of General and Applied Microbiology 29: 41-50.

BALDOCK, B.M., ROGERSON, A. and J. BERGER. 1982. Further studies on respiratory rates of freshwater amoebae (Rhizopoda, Gymnamoebia). Microbial Ecology 8: 55-60.

ROGERSON, A. and J. BERGER. 1982. The stimulatory role of ciliates in crude oil Biodegradation . Journal of Protozoology 29: Supplement Abstract No. 59.

ROGERSON, A. and J. BERGER. 1982. Ultrastructure of Colpidium colpoda following chronic exposure to partially degraded crude oil. Biosphere 32:534-535.

ROGERSON, A., BERGER, J. and C.M. GROSSO. 1982. Acute toxicity effects of ten crude oils on the survival of the rotifer Asplanchna sieboldi and sublethal effects on consumption and neonate production. Environmental Pollution Series B 29: 179-187.

ROGERSON, A. and J. BERGER. 1982. Ultrastructural modification of the ciliate protozoa, Colpidium colpoda, following chronic exposure to crudeoil. Transactions of the American Microscopical Society 101: 27-35.

ROGERSON, A. 1982. An estimate of the annual production and energy flow through the large naked amoeba population inhabiting a Sphagnum bog. Archives für Protistenkunde 126: 145-149.

BERGER, J. and A. ROGERSON. 1981. The response of protozoa to crude oil stress. Institut National de la Sante et de la Recherche Medicale Symposia Series 106: 303-310.

ROGERSON, A. and J. BERGER. 1981. The toxicity of an oil dispersant (Corexit 9527) and oil-dispersant mixtures to ciliate protozoa. Chemosphere 10: 33-39.

ROGERSON, A. and J. BERGER. 1981. The effects of cold temperatures and crude oil on the abundance and activity of protozoa in a garden soil. Canadian Journal of Zoology 59: 1554-1560.

ROGERSON, A. 1981. The ecological energetics of Amoeba proteus (Protozoa). Hydrobiologia 85: 117-128.

ROGERSON, A. and J. BERGER. 1981. The effect of crude oil and petroleum-degrading microorganisms on the growth of freshwater and soil protozoa. Journal of General Microbiology 124: 53-59.

ROGERSON, A. and J. BERGER. 1980. Protozoa and crude oil: a question of concern? Oil Spill Technology Newsletter 5: 157-160.

ROGERSON, A. 1980. Generation times and reproductive rates of Amoeba proteus as influenced by temperature and food concentration. Canadian Journal of Zoology 58: 543-48.

ROGERSON, A. 1979. The calorific content of Amoeba proteus and Tetrahymena pyriformis (Protozoa). Canadian Journal of Zoology 57: 2463-65.

Abstracts

ROGERSON, A., HOBSON, P.R., KRANTZ, E.P., LAMPITT, R.S. and J. WATSON.1996. The potential application of underwater hologrammetry for the study of planktonic protists and suspended flocs. Journal of Eukaryotic Microbiology43: 9A, abstract no 53.

SHIVJI, MAHMOOD, Ph.D., Professor

Publications

DeBiasse, M.B., V.P. Richards and M.S. Shivji. 2009. Genetic assessment of connectivity in the common reef sponge, Callyspongia vaginalis (Demospongiae: Haplosclerida) reveals high population structure along the Florida reef tract. Coral Reefs. In P ress.

Chapman, D.D., D. Pinhal and M.S. Shivji. 2009. Tracking the fin trade: Genetic stock identification in Western Atlantic scalloped hammerheads sharks (Sphyrna lewini). Endangered Species Research. In Press.

Beerkircher, L., F. Arocha, A. Barse, E. Prince, V. Restrepo, J. Serafy and M. Shivji. 2009. Species misidentification effects on population assessment of overfished white marlin Tetrapturus albidus and roundscale spearfish Tetrapturus georgii. Endangered Species Research. In Press.

Shivji, M.S. 2009. DNA Forensic Applications in Shark Management and Conservation. In: Sharks and Their Relatives: Physiological Adaptations, behavior, Ecology, Conservation, and Management. (Eds: J.C. Carrier, M.R. Heithaus, J.A. Musick). CRC Press. In Press.

Victor, B.C., R. Hanner, M. Shivji, J. Hyde and C. Caldow. 2009. Identification of the larval and juvenile stages of the Cubera Snapper, Lutjanus cyanopterus, using DNA barcoding. Zootaxa 2215: 24\22636.

Owen, C.L, C.G. Messing, G.W. Rouse and M.S. Shivji. 2009. Using a combined approach to explain the morphological and ecological diversity in Phanogenia gracilisHartlaub, 1893 (Echinodermata: Crinoidea) sensu lato: two species or intraspecific variation? Marine Biology DOI 10.1007/s00227-009-1173-6.

Wong, E.H.-K, M.S. Shivji and R.H. Hanner. 2009. Identifying sharks with DNA barcodes: assessing the utility of a nucleotide diagnostic approach. Molecular Ecology Resources 9: 243-256.

Richards, V.P., M. Henning, W. Witzell and M. Shivji. 2009. Species Delineation and Evolutionary History of the Globally Distributed Spotted Eagle Ray (Aetobatus narinari). Journal of Heredity 100(3): 273-283.

Smith, W.D., J. J. Bizzarro, V.P. Richards, J. Nielsen, J.F.M\341rquez-Far\355as, and M.S. Shivji. 2009. Morphometric convergence and molecular divergence: the taxonomic status and evolutionary history of Gymnura crebripunctata (Peters, 1869) and G. marmorata (Cooper, 1864) in the eastern Pacific Ocean. Journal of Fish Biology. 75:761-783.

Sebastian, H., P. Haye and M. Shivji. 2008. Characterization of the pelagic shark fin trade in north central Chile by genetic identification and trader surveys. Journal of Fish Biology 73:2293-2304.

Chapman, D., B. Firchau and M. Shivji. 2008. Parthenogenesis in a large-bodied requiem shark (family Carcharhinidae). Journal of Fish Biology 73:1473-1477.

Shivji, M.S., and V. Richards. 2007. Bioinformatics Tools in Conservation Biology. In: Using Bioinformatics in the Exploration of Genetic Diversity. (Edited by M. He). Biomedical and Life Sciences Audio-Visual Online Presentation Series, Henry Stewart Talks Publishing. www.hstalks.com.

Feldheim, K.A., A.J. Stow, H. Ahonen, D.D. Chapman, M.S. Shivji, V. Peddemors and S. Wintner. 2007. Polymorphic microsatellite markers for studies of the conservation and reproductive genetics of imperilled sand tiger sharks (Carcharias taurus). Molecular Ecology Notes 7 (6), 1366-1368.

Chapman, D.D, M. S. Shivji, E. Louis, J. Sommer, H. Fletcher and P.A. Prodöhl. 2007. Virgin birth in a hammerhead shark. Biology Letters 3(4): 425-427.

Chapman, D.D., E.K. Pikitch, E.A. Babcock, and M.S. Shivji. 2007. Deep-diving and diel changes in vertical habitat use by Caribbean reef sharks, Carcharhinus perezi. Marine Ecology Progress Series. 344: 271-275.

Magnussen, J.E., E.K. Pikitch, S.C. Clarke, C. Nicholson, A.R. Hoelzel and M.S. Shivji. 2007. Genetic Tracking of Basking Shark (Cetorhinus maximus) Products in International Trade. Animal Conservation. Animal Conservation 10: 199-207.

Richards, V.P., J.D. Thomas, M.J. Stanhope and M.S. Shivji. 2007. Genetic connectivity in the Florida reef system: comparative phylogeography of commensal invertebrates with contrasting reproductive strategies. Molecular Ecology 6: 139-157.

Garla, R.C., D.D. Chapman, M.S. Shivji, B.M. Wetherbee and A.F. Amorim. 2006. Habitat of juvenile Caribbean reef sharks, Carcharhinus perezi, at two oceanic insular marine protected areas in the southwestern Atlantic Ocean: Fernando de Noronha Archipelago and Atol das Rocas, Brazil . Fisheries Research. 81: 236-247.

Shivji, M.S, J.E. Magnussen, L.R.Beerkircher, G. Hinteregger, D.W. Lee, J.E. Serafy and E.D. Prince. 2006. Validity, identification and distribution of the roundscale spearfish, Tetrapturus georgii (Teleostei: Istiophoridae): morphological and molecular evidence. Bulletin of Marine Science. 79: 483-491.

Clarke, S.C., M.K. McAllister, E.J. Milner-Gulland, G. P. Kirkwood, C.G.J. Michielsens, D.J. Agnew, E.K. Pikitch, H. Nakano and M.S. Shivji. 2006. Global estimates of shark catches using trade records from commercial markets. Ecology Letters. 9: 1115-1126.

Hoelzel, R.A., M. S. Shivji, J. E. Magnussen and M.P. Francis. 2006. Low worldwide genetic diversity in the basking shark (Cetorhinus maximus). Biology Letters 2(4): 639-642.

Garla, R.C., Chapman, D.D., Wetherbee, B.M., Shivji, M. 2006. Movement patterns of young Caribbean reef sharks, Carcharhinus perezi, at Fernando de Noronha Archipelago, Brazil: the potential of marine protected areas for conservation of a nursery ground. Marine Biology. 149:189-199.

Clarke, S.C., J.E. Magnussen, D.L. Abercrombie, M. McAllister and M.S. Shivji. 2006. Identification of shark species composition and proportion in the Hong Kong shark fin market using molecular genetics and trade records. Conservation Biology. 20: 201-211.

Shivji, M.S., D.D. Chapman, E.K. Pikitch and P.W. Raymond. 2005. Genetic profiling reveals illegal international trade in fins of the great white shark, Carcharodon carcharias. Conservation Genetics. 6:1035-1039.

Pikitch, E.K. D.D. Chapman, E.A. Babcock and M.S. Shivji. 2005. Diversity, demographic population structure and habitat-partitioning of reef-associated elasmobranchs at a Caribbean oceanic atoll (Glover's Reef, Belize). Marine Ecology Progress Series. 302: 187-197.

Chapman, D., E.K. Pikitch, E. Babcock and M. Shivji. 2005. Marine reserve design and evaluation using automated acoustic telemetry: a case-study involving coral reef-associated sharks in the Mesoamerican Caribbean. Marine Technology Society Journal. 39: 42-53.

Abercrombie, D.L., S.C. Clarke and M.S. Shivji. 2005. Global-scale genetic identification of hammerhead sharks: Application to assessment of the international fin trade and law enforcement. Conservation Genetics. 6: 775-788.

Wirshing, H.H., C.G. Messing, C.J. Douady, J. Reed, M.J. Stanhope and M.S. Shivji. 2005. Molecular evidence for multiple lineages in the gorgonian family Plexauridae (Anthozoa: Octocorallia). Marine Biology 147(2): 497-508.

Pank, M., L. Natanson, N. Kohler, M. Stanhope and M. Shivji. 2005. Rapid Species Identification of Pelagic Shark Tissues Using Genetic Approaches. In: Sharks of the Open Ocean: Biology, Fisheries and Conservation (eds. M. D. Camhi and E. K. Pikitch). Blackwell Publishing, Oxford. In Press.

Chapman, D.D., P.A. Prodohl, J. Gelsleichter, C.A. Manire and M.S. Shivji. 2004. Predominance of genetic monogamy by females in a hammerhead shark, Sphyrna tiburo: Implications for shark conservation. Molecular Ecology 13: 1965-1974.

Beerkircher, L., E. Cortes and M. Shivji. 2004. Characteristics of shark bycatch observed on pelagic longlines off the southeastern United States, 1992-2000. Marine Fisheries Review 64(4):40-49.

Chapman, D.D., M.J. Corcoran, G.M. Harvey, S. Malan and M.S. Shivji. 2003. Mating behavior of southern stingrays, Dasyatis americana (Dasyatidae). Environmental Biology of Fishes. 68 (3): 241-245.

Chapman, D., D. Abercrombie, C. Douady, E. Pikitch, M. Stanhope and M. Shivji. 2003. A streamlined, bi-organelle, multiplex PCR approach to species identification: application to global conservation and trade monitoring of the great white shark, Carcharodon carcharias. Conservation Genetics. 4(4): 415-425.

L. Beerkircher, M. Shivji and E. Cortes. 2003. A Monte Carlo demographic analysis of the silky shark, Carcharhinus falciformis: implications of gear selectivity. Fishery Bulletin. 101: 168-174.

L. Beerkircher, E. Cortes and M. Shivji. 2003. Characteristics of shark bycatch in the pelagic longline fishery off the southeastern U.S., 1992-1997. In: Sharks of the Open Ocean. E. Pikitch & M. Camhi (Eds.). Blackwell Science Ltd. (In Press).

C. J. Douady, M. Dosay, M. S. Shivji, and M. J. Stanhope. 2002. Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Molecular Phylogenetics and Evolution 26: 215-221.

M. Shivji, S. Clarke, M. Pank, L. Natanson, N. Kohler and M. Stanhope. 2002. Genetic Identification of Pelagic Shark Body Parts for Conservation and Trade-Monitoring. Conservation Biology 16(4): 1036-1047.

White, C. M., Messing, C. G., Shivji, M. & Forstner, M.R.J. 2001. Initial phylogeny of the Comasteridae (Crinoidea) from mtDNA sequences. In: Echinoderms 2000. (M. Barker, Ed.). Balkema Publishers, Rotterdam.

M. Pank, M. Stanhope, L. Natanson, N. Kohler and M. Shivji . 2001. Rapid and simultaneous identification of body parts from the morphologically similar sharks Carcharhinus obscurus and Carcharhinus plumbeus (Carcharhinidae) using multiplex PCR. Marine Biotechnology 3:231-240.

Shivji, S. Rogers and M. Stanhope. 1996. DNA Studies on Sharks. In: The Shark Tagger 1995 Summary. NOAA, National Marine Fisher Service Report. Pg. 15.

Stanhope, M. Smith, V. Waddell, C. Porter, M. Shivji and M. Goodman. 1996. Mammalian evolution and the IRBP gene: convincing evidence for several superordinal clades. J. Molecular Evolution 43(2): 83-92

Smith, M. Shivji, V. Waddell and M. Stanhope. 1996. Phylogenetic evidence from the IRBP gene for the paraphyly of toothed whales, with mixed support for Cetacea as a suborder of Artiodactyla. Molecular Biology and Evolution 13(7): 918-922.

Shivji, M., C. Tagliaro, L. Natanson, N. Kohler, S. Rogers and M. Stanhope. 1996. Utility of ribosomal DNA ITS2 for deriving shark species- diagnostic identification markers. In: Proceedings International Congress on the Biology of Fishes, pgs 87-93,(E.M. Donaldson & D.D. MacKinlay, eds.). San Francisco, CA.

Stanhope, M.J., D.A. Tagle, M.S. Shivji, M. Hattori, Y. Sakaki, J.L. Slightom, and M. Goodman, 1993. Multiple L1 progenitors in Prosimian primates: Phylogenetic evidence from ORF1 sequences. J. Molecular Evolution, 37, 179-189.

Shivji, M. (with S. Ellis, G. Braun & T. Deshler), 1992. Sediment Quality Characterization along Northwest Pipeline Corporation's Proposed Construction Path across the Columbia River. Tetra Tech, Inc. Prepared for PIC Technologies, Inc.

Shivji, M. (with S. Ellis, C. DeGasperi, T. Deshler & G. St. Amant), 1992. Reconnaissance Survey of the Lower Columbia River: Inventory and Characterization of Pollutants. Tetra Tech, Inc. Prepared for the Lower Columbia River Bi-State ( WA & OR) Program.

Shivji, M. (with S. Ellis, T. Turk, C. DeGasperi and N. Musgrove), 1992. Reconnaissance Survey of the Lower Columbia River: Reconnaissance Report. Tetra Tech, Inc. Prepared for the Lower Columbia Bi-State (WA & OR) Pr ogram.

Shivji, M. (with C. DeGasperi and S. Ellis), 1992. Willamette River Basin Water Quality Study: Water Quality Survey Data. Tetra Tech, Inc. Prepared for the Oregon Department of Environmental Quality.

Shivji, M., 1992. Willamette River Basin Water Quality Study: Bacteria Monitoring Recommendations. Tetra Tech, Inc. Prepared for the Oregon Department of Environmental Quality.

Shivji, M., 1992. Willamette River Basin Water Quality Study: Review and Summary of Bacterial Conditions in the Willamette River and Major Tributaries. Tetra Tech, Inc. Prepared for the Oregon Dept. of Environmental Quality.

Shivji, M., N. Li and R. Cattolico, 1992. Structure and organization of rhodophyte and chromophyte plastid genomes: Implications for the ancestry of plastids. Molecular and General Genetics, 232, 65-73.

Shivji, M., S. Rogers and M. Stanhope, 1992. Rapid isolation of high-molecular weight DNA from marine macroalgae. Marine Ecology Progress Series, 84, 197-203.

Stanhope, M., D. Tagle, M. Shivji, M. Hattori, Y. Sakaki, J. Slightom and M. Goodman, 1993. Multiple L1 progenitors in prosimian primates: phylogenetic evidence from ORF1 sequences. J. Molecular Evolution, 37:179-189.

Shivji, M., S.O. Rogers, and M. Stanhope, 1992. Rapid isolation of high molecular weight DNA from marine microalgae. Marine Ecology Progress Series, 84, 197-203.

Shivji, M., and T. Petrillo, 1991. Puget Sound Sediment Reconnaissance Survey 1991. Tetra Tech, Inc. Prepared for the Washington State Department of Natural Resources.

Shivji, M., 1991. Understanding the Sources, Fates, and Effects of Toxic Materials Entering the Marine Environment as a Result of Human Activities. In: Federal Plan for Ocean Pollution Research, Development, and Monitoring, U.S. Department of Commerce, National Oceanic and Atmospheric Administration, 9-24.

Shivji, M., 1991. Organization of the chloroplast genome in the red alga Porphyra yezoensis. Current Genetics, 19, 49-54.

Shivji, M., 1990. Design of Biological Monitoring Programs for New York and New Jersey 403(c) Discharges. Tetra Tech, Inc. Prepared for the U.S. Environmental Protection Agency.

Shivji, M.. 1985. Interactive effects of light and nitrogenon growth and chemical composition of juvenile Macrocystis pyrifera (L.)C. Ag. (Phaeophyta) sporophytes. J. Exp. Mar. Biol. Ecol. 89:81-96

Shivji, M., D. Parker, B. Hartwick, M.J. Smith, and N.A. Sloan. 1983. Feeding and distribution study of the sunflower sea star Pycnopodia helianthoides (Brandt, 1835). Pacific Science 37(2): 133-140.

Abstracts

Bernard, A., K. Feldheim, L. Howey, B. Wetherbee, M. Heithaus and M. Shivji. 2008. Defining Management Units of a Migratory Species: the Global Genetic Population Structure of the Tiger Shark (Galeocerdo cuvier). Elasmobranch Society 24th Annual Meeting, July, 2008. Montreal, Canada.

Corcoran. M, B. Wetherbee, M. Shivji, M. Potenski, D. Chapman, G. Harvey. 2008. Supplemental Feeding for Tourism Radically Alters Movement Patterns and Spatial Distribution of the Southern Stingray, Dasyatis america. Elasmobranch Society 24th Annual Meeting, July, 2008. Montreal, Canada.

Horn, R., W. Robbins, D. McCauley and M. Shivji. 2008. Genetic Structure of the Gray Reef Shark (Carcharhinus amblyrhynchos), Based on Microsatellite and Mitochondrial DNA Analyses with Implications for Management. American Elasmobranch Society 24th Annual Meeting, July, 2008. Montreal, Canada. Howey, L., B. Wetherbee and M. Shivji. 2008. Movement Patterns and Environmental Preferences of Blue Sharks (Prionace glauca) Determined by Satellite Archival Tagging. American Elasmobranch Society 24th Annual Meeting, July, 2008. Montreal, Canada.

Testerman, C., P. Prodohl and M. Shivji. 2008. Global Phylogeography of the Great (Sphyrna mokarran) and Smooth (Sphyrna zygaena) Hammerhead Sharks. American Elasmobranch Society 24th Annual Meeting, July, 2008. Montreal, Canada.

DeBiasse, M., V. P. Richards and M. S. Shivji. 2008. Genetic connectivity in the branching vase sponge (Callyspongia vaginalis) across the Florida reef tract and Caribbean. 11th International Coral Reef Symposium, Ft. Lauderdale, July 2008.

Hester, J.M., V. P. Richards, K. Feldheim and M. S. Shivji. 2008. Population structure in the brown tube sponge (Agelas conifera) in the Florida reef tract and Caribbean. 11th International Coral Reef Symposium, Ft. Lauderdale, July 2008.

Richards, V.P., M. Henning, W. Witzell and M. S. Shivji. 2008. A Molecular Assessment of Speciation and Evolutionary History of the Globally Distributed Spotted Eagle Ray (Aetobatus narinari). 11th International Coral Reef Symposium, Ft. Lauderdale, July 2008.

Richards, V.P., and , Mahmood Shivji. 2008. Genetic Evidence Supports Larval Retention in the Western Caribbean for an Invertebrate with High Dispersal Capability (Ophiothrix suensonii: Echinodermata, Ophiuroidea). 11th International Coral Reef Symposium, Ft. Lauderdale, July 2008.

Richards, V.P., K. Feldheim and M. S. Shivji. 2008. Contrasting patterns of population structure and dispersal for the giant barrel sponge (Xestospongia muta) within the Florida reef tract and Caribbean. 11th International Coral Reef Symposium, Ft. Lauderdale, July 2008.

Horn, R., W. Robbins, D. J. McCauley, P. Lobel and M.S. Shivji. 2008. Population Genetic Structure of a Coral Reef Ecosystem Apex Predator, the Gray Reef Shark (Carcharhinus amblyrhynchos). 11th International Coral Reef Symposium, Ft. Lauderdale, July 2008.

Shivji, M. E. Pikitch, J. Magnussen and D. Chapman. 2006. Application of genetic forensic tools in shark fishery monitoring and law enforcement. American Elasmobranch Society 22nd Annual Meeting, July, 2006. New Orleans, LA.

Shivji, M., J. Magnussen, L. Beerkircher, G. Hinteregger, D. Lee, J. Serafy and E. Prince. 2005. Validity of the roundscale spearfish: a morphological and molecular perspective. 4th International Billfish Symposium, Catalina Is. CA, Oct. 31-Nov. 4, 2005.

Magnussen, J., E. Prince, J. Serafy and M. Shivji. 2005. Single step genetic identification of Atlantic billfish. 4th International Billfish Symposium, Catalina Is. CA, Oct. 31-Nov. 4, 2005.

Chapman, D.D., P. Prodohl, J. Gelsleichter and M.S. Shivji. 2005.Mating systems of the bonnethead and scalloped hammerhead sharks in the southesat USA as revealed by microsatellite DNA profiling. American Elasmobranch Society 21st Annual Meeting, July, 2005. Tampa, FL.

Magnussen, J.E and M.S. Shivji. 2005. Efficient genetic identification of species and geographic origin of body parts from CITES and/or legislatively protected shark species. American Elasmobranch Society 21st Annual Meeting, July, 2005. Tampa, FL.

Henning, M. and M.S. Shivji. 2005. Streamlined genetic identification of ridgeback sharks for fisheries management and conservation. American Elasmobranch Society 21st Annual Meeting, July, 2005. Tampa, FL.

Richards, V.P. and M. S. Shivji. 2005. Strong population genetic structure in the southern stingray, Dasyatis americana, revealed by mtDNA control region sequences. American Elasmobranch Society 21st Annual Meeting, July, 2005. Tampa, FL.

Richards, V.P., J.D. Thomas, M.S. Shivji. 2005. Reproductive dispersal strategy and genetic connectivity in commensal, sponge dwelling, coral reef invertebrates. American Society for Limnology and Oceanography. Santiago de Compostela, Spain. June, 2005.

Shivji, M.S. 2004. Molecular genetic detection of shark fisheries products in international trade. Florida Marine Biotechnology Summit IV. Boca Raton, FL. Oct. 2004.

Magnussen, J.M. and M.S. Shivji, 2004. Streamlined genetic identification of species and geographic origin of CITES listed and/or legislatively protected shark species. Florida Marine Biotechnology Summit IV. Boca Raton, FL. Oct. 2004.

Henning, M., and M.S. Shivji. 2004. Genetic detection of protected shark species in the U.S. Atlantic fishery. Florida Marine Biotechnology Summit IV. Boca Raton, FL. Oct. 2004.

Shivji, M.S., J.E. Magnussen and S.C. Clarke. 2004. Applying streamlined genetic identification of shark body parts in U.S. fisheries enforcement and monitoring global-scale trade. Wildlife Forensics: The Missing Link in Conservation. Northwest Association of Forensic Scientists, Ashland, Oregon, Oct. 2004

Magnussen, J.M. and M.S. Shivji, 2004. An efficient multiplex PCR approach to identification of species and geographic origin of body parts from CITES listed and/or legislatively protected shark species. Wildlife Forensics: The Missing Link in Conservation. Northwest Association of Forensic Scientists, Ashland, Oregon, Oct. 2004

Richards, V.J. Thomas, M. Stanhope, and M. Shivji. 2004. High levels of gene flow in commensal, brooding marine amphipods: mitochondrial DNA variation in Florida populations of the Leocothoe spinicarpa species complex. 10th International Coral Reef Symposium, June 29-July 2, 2004. Okinawa, Japan.

Shivji, M.S., J.E. Magnussen, and E.K. Pikitch. 2004. Rapid genetic identification of shark body parts for monitoring fisheries and global trade. 4th World Fisheries Congress, Vancouver, BC. May, 2004.

Chapman, D.D., M. Shivji, E. Louis, and P. Prodohl. 2004. A genetic investigation into a shark "virgin-birth": asexual reproduction, inter-specific hybridization or long-term sperm retention? American Elasmobranch Society 19th Annual Meeting, June, 2004. Norman, OK.

Shivji, M.S., D.D. Chapman and E.K. Pikitch. 2004. Applying new DNA forensic methods to monitor trade in shark products, with special reference to great white sharks. Workshop on Conservation Research of Great White Sharks. Wildlife Conservation Society, New York, January 20-22, 2004.

Wirshing, H.H., C.G. Messing, J. Reed, M.J. Stanhope, and M.S. Shivji. 2003. Phylogenetic relationships in the gorgonian family Plexauridae (Anthozoa: Octocorallia: Holaxonia) based on two mitochondrial genes. International Conference on Coelenterate Biology (ICCB), Kansas City, July 2003.

Hoenig, J., and M. Shivji. 2002. Estimating Species Composition of Shark Catches from DNA Assays: Group Testing Reduces the Number of Laboratory Tests. Elasmobranch Symposium. Nortn Atlantic Fisheries Organization. Spain. Sept. 2002.

Abercrombie, D., D. Chapman, E. Pikitch and M. Shivji. 2002. Rapid detection of great white shark tissues for international conservation and trade monitoring using a streamlined, nuclear (ITS2) and mitochondrial (cyt b) bi-locus, multiplex PCR approach. American Elasmobranch Society 18th Annual Meeting, July, 2002. Kansas City.

Smith, W., J. Bizzarro, J. Nielsen, J. Márquez-farias, and M. Shivji. 2002. Taxonomic validity of Gymnura crebripunctata (Peters 1869) and Gymnura marmorata (Cooper 1863): a meristic, morphometric, and molecular approach. American Elasmobranch Society 18th Annual Meeting, July, 2002. Kansas City.

Clarke, S., E. Pikitch and M. Shivji. 2002. The Market for Shark Fins: Determination of Species Composition and Quantification of Global Trade. Shark 2002 Conference, Taipei, Taiwan, 13-16 May 2002.

Clarke, S., M. Shivji and M. McAllister. 2001. Identification of Species Composition in the Hong Kong Shark Fin Trade using Genetic Techniques and Trader Records. European Elasmobranch Association Annual Meeting, Kiel, Germany, October 2001.

Shivji, M., and S. Clarke. 2001. Genetic approaches to rapid identification of shark body parts for conservation and trade monitoring. Second Symposium on Marine Conservation Biology. San Francisco, June 2001. Abstract Pg. 84.

Shivji, M., M. Pank, D. Chapman, D. Abercrombie and J. Neilsen. 2000. Use of genetic markers for rapid and accurate identification of shark body parts: applications for fisheries management, conservation and forensics. Florida Sea Grant Marine Biotechnology Summit II. Tampa, Florida, October 2000.

Chapman, D., P. Prodohl, C. Manire and M.S. Shivji. 2000. Microsatellite DNA profiling in the bonnethead shark, Sphyrna tiburo: application to mating system and population structure studies. American Elasmobranch Society 16th Annual Meeting, June, 2000. La Paz, Mexico. Abstract Pg 112.

Shivji, M., M. Pank, L. Natanson, N. Kohler and M. Stanhope. 2000. Rapid, genetics-based identification of pelagic shark tissues using multiplex PCR. International Pelagic Shark Workshop, Monterey, CA. Feb. 2000. Abstract. Pg.17.

Prodohl, P., M. Stanhope and M. Shivji. 2000. Global population structure of the blue shark Prionace glauca as revealed by microsatellite polymorphisms. International Pelagic Shark Workshop, Monterey, CA. Feb. 2000. Abstract. Pg.16.

Beerkircher, L., E. Cortes and M. Shivji. 2000. Elasmobranch bycatch observed on pelagic longlines off the southeastern U.S. coast. International Pelagic Shark Workshop, Monterey, CA. Feb. 2000. Abstract. Pg.1.

Shivji, M., S.O. Rogers and M.J. Stanhope. 1999. Species-specific markers for PCR-based identification of sharks. American Elasmobranch Society 15th Annual Meeting, June, 1999. Pennsylvania. Abstract Pg. 204.

Prodohl, P., M.J. Stanhope and M.S. Shivji. 1999. Microsatellite DNA profiling in the blue shark (Prionace glauca): development and potential application for population studies. American Elasmobranch Society 15th Annual Meeting, June, 1999. Pennsylvania. Abstract Pg. 187.

Walker, W., M.S. Shivji, M.J. Stanhope and S.O Rogers. 1999. Characterization of group I intron-like elements in shark ribosomal DNA spacers. American Elasmobranch Society 15th Annual Meeting, June, 1999. Pennsylvania. Abstract Pg. 227.

Hilkemann, B., M.J. Stanhope and M.S. Shivji. 1999. Comparative structure and evolution of mitochondrial control region in sharks. American Elasmobranch Society 15th Annual Meeting, June, 1999. Pennsylvania. Abstract Pg. 127.

Balchowsky, H., and M.S. Shivji. 1999. Genetic approaches to rapid species identification of reef fishes. International Conference on Scientific Aspects of Coral Reef Assessment, Monitoring, and Restoration. Ft. Lauderdale, Fl. Abstract Pgs. 50-51.

Shivji, M., S.O Rogers and M.J. Stanhope. 1998. Shark ribosomal DNA internal transcribed spacers: structure, evolution, and use in fisheries management and systematics. International Workshop on Marine Genetics - Rio 98. Rio de Janeiro, Brazil, September 1998. Pgs. 65-66.

Shivji, M.S., M.J. Stanhope and S.O. Rogers. 1998. Structure and Evolution of shark ribosomal DNA internal transcribed spacers. American Society of Ichthyologists and Herpetologists 78th Annual Meeting, Guelph, Ontario, Canada. Absrt. No. 70

Ertan, B., L. Park, M.J. Stanhope and M.S. Shivji. 1998. Characterization of blue shark (Prionace glauca) mitochondrial genome control region sequences for population genetic studies. American Society of Ichthyologists and Herpetologists 78th Annual Meeting, Guelph, Ontario, Canada. Absrt. No. 71

Balchowsky, H.A.. 1998. Quick and accurate identification of triggerfishes (Balistidae) using PCR with species-diagnostic mitochondrial (12S/16S) primers. American Society of Ichthyologists and Herpetologists 78th Annual Meeting, Guelph, Ontario, Canada. Absrt. No. 320 (note: abstract author is a graduate student in M. Shivji's laboratory).

Shivji, M., M. Stanhope and S. Rogers. 1997. Group I introns ("spintrons") are present in shark nuclear ribosomal DNA internal transcribed spacers. American Society of Ichthyologists and Herpetologists 77th Annual Meeting, Seattle, WA. Pg. 268.

Lu, E., L. Bullock, M. Stanhope and M. Shivji. 1997. Sequence characterization of nuclear Ribosomal DNA internal transcribed spacer 1 (ITS1) in groupers (F. Serranidae; subfamily Epinephelinae). American Society of Ichthyologists and Herpetologists 77th Annual Meeting, Seattle, WA. Pg. 199.

Shivji, M., M. Stanhope and S. Rogers. 1997. Molecular markers for shark species identification. American Fisheries Society, 127th Annual Meeting, Monterey, CA. Pg. 129.

SOLOVIEV, ALEXANDER, Ph.D., Associate Professor

Books

Soloviev, A.V. and R. Lukas, 2006: The Near-Surface Layer of the Ocean: Structure, Dynamics, and Applications. Springer, NY, 572 pp.

Chapters in Books

Soloviev, A. and B. Klinger, 2002: Convection: Convection in the Ocean. In: Encyclopedia of Atmospheric Sciences, Academic Press, UK.

Soloviev, A. and B. Klinger, 2001: Open Ocean Convection. In: Encyclopedia of Ocean Sciences, Academic Press, UK, 2015-2022.

Soloviev, A., J. Edson, W. McGillis, P. Schluessel, and R. Wanninkhof, 2001: Fine Thermohaline Structure and Gas-Exchange in the Near-Surface Layer of the Ocean During GasEx-98. In AGU Monograph Gas Transfer at Water Surfaces, Eds. E.S. Saltzman, M. Donealn, W. Drennan, and R. Wanninkhof. 181-185.

Soloviev, A. and P. Schluessel, 2001: A Model of the Air-Sea Gas Exchange Incorporating the Physics of the Turbulent Boundary Layer and the Properties of the Sea Surface. In: AGU Monograph Gas Transfer at Water Surfaces. Eds. E.S. Saltzman, M. Donealn, W. Drennan, and R. Wanninkhof, pp. 141-146.

Articles in Peer-Reviewed US and International Journals

*Fujimura, A., A. Soloviev., and V. Kudryavtsev, 2009: Numerical simulation of the environmental effects on SAR imagery of ship wakes. Geophysical Research Letters, manuscript for submission.

*Soloviev, A.V., M. Gilman, K. Young, S. Brusch, and S. Lehner, 2009: Sonar measurements in ship wakes simultaneous with TerraSAR-X overpasses. Geoscience and Remote Sensing, IEEE Transactions. Submitted.

Brusch, S, S. Lehner, T. Fritz, A. Soloviev, and B. van Schie "Ship surveillance with TerraSAR-X". Geoscience and Remote Sensing, IEEE Transactions. Submitted.

Soloviev, A and R. Lukas, 2009: Effects of Bubbles and Sea Spray on Air-Sea Exchanges in Hurricane Conditions. Boundary-Layer Meteorology, submitted.

Rascle, N., B. Chapron, F. A, and A. Soloviev, 2009: Comments on "On vertical structure of wind-driven sea currents" by V. Kudryavtsev, V. Shrira, V. Dulov and V. Malinovsky". Journal of Physical Oceanography. Submitted.

Soloviev, A., M. Donelan, H. Graber, B. Haus, and Peter Schlüssel, 2007: Estimation of near-surface turbulence and CO2 transfer velocity from satellite data. Special Issue Gas Transfer at Water Surfaces of the Journal of Marine Systems. Elsevier 66, 182-194.

Soloviev, A.V., 2007: Coupled Renewal Model of Ocean Viscous Sublayer, Thermal Skin Effect and Interfacial Gas Transfer Velocity. Special Issue Gas Transfer at Water Surfaces of the Journal of Marine Systems. Elsevier 66, 19-27.

Katsaros, K.B., A.V. Soloviev, R.H. Weisberg, and M.E. Luther, 2005: Reduced Horizontal Sea Surface Temperature Gradients under Conditions of Clear Sky and Weak Winds. Boundary-Layer Meteorology 116, 175-185.

Wanninkhof, R., K.F. Sullivan, W.P. Dammann, J.R. Proni, F. Bloetscher, A.V. Soloviev, and T.P. Carsey, 2005: Fairfield Tracing of a Point Source Discharge Plume in the Coastal Ocean Using Sulfur Hexaflourid. Environmental Science & Technology 39, 8883-8890.

Katsaros, K.B. and A.V. Soloviev, 2004: Vanishing Sea Surface Temperature Gradients at Low Wind Speeds. Boundary-Layer Meteorology 112, 381-396(16)

Soloviev, A. and R. Lukas, 2003: Observation of Wave Enhanced Turbulence in the Near Surface Layer of the Ocean During TOGA COARE. Deep-Sea Research Part I 50, 371-395

Soloviev, A.V., M.E. Luther, and R.H. Weisberg, 2003:  Energetic baroclinic super-tidal oscillations on the shelf off Southeast Florida. Geophysical Research Letters 30, No. 9, 1463, doi:10.1029/2002GL016603

Soloviev, A.V., R.J. Walker, R.H. Weisberg, and M.E. Luther, 2003: Costal Observatory Investigates Energetic Current Oscillation on the Southeast Florida shelf. EOS, Transactions, AGU 84, No. 42, 11 October 2003, 441-450

Shay, L.K., Cook, T.M., Peters, H., Mariano, A.J., Weisberg, R., An, P.E.., A. Soloviev, and M. Luther, 2002: Very high-frequency radar mapping of surface currents. IEEE Journal of Oceanic Engineering 27 (2), 155-169

Soloviev, A., R. Lukas, and H. Matsuura, 2002: Sharp Frontal Interfaces in the Near-Surface Layer of the Tropical Ocean. Special Issue of Journal of Marine Systems (Elsevier) on Ocean Fronts 37(1-3), 47-68

Schluessel, P. and A. Soloviev, 2002: Air-sea gas exchange: Cool skin and gas transfer velocity in the North Atlantic Ocean during GasEx-98. Advances in Space Research 29(1), 107-110

Soloviev, A., R. Lukas, and P. Hacker, 2001: An approach to parameterization of the oceanic turbulent boundary layer in the western Pacific warm pool. J. Geophys. Res. 106, 4421-4435

Shay, L. K., T. M. Cook, B. K. Haus, J. Martinez, H. Peters, J. VanLeer, A. J. Mariano, P. E. An, S. Smith, A. Soloviev, R. Weisberg, and M. Luther, 2000: VHF Radar detects submesoscale vortex along the Florida Coast. EOS 81, 209-213

Soloviev, A.V., R. Lukas, and P. Hacker, 2000: Horizontal structure of the upper ocean velocity fields in the western equatorial Pacific warm pool. J. Phys. Oceanogr. 30, 416-432

Soloviev, A., R. Lukas, S., P. Hacker, H. Schoeberlein, M. Baker, and A. Arjannikov, 1999: A near-surface microstructure sensor system used during TOGA COARE. Part II: Turbulence Measurements. J. Atmos. and Oceanic Techn. 16, 1598-1618

Soloviev, A., R. Lukas, S. DeCarlo, J. Snyder, A. Arjannikov, V.Turenko, M. Baker, and D. Khlebnikov, 1998: A near-surface microstructure sensor system used during TOGA COARE. Part I: Bow Measurements. J. Atmos. and Oceanic Techn. 15, 563-578

Soloviev, A. and P. Schluessel, 1998: Comments on "Air-Sea Gas Transfer: Mechanisms and Parameterization". J. Phys. Oceanogr. 28, 1643-1645

Soloviev, A.V. and R. Lukas, 1997: Sharp frontal interfaces in near-surface layer of the ocean in the western equatorial Pacific warm pool. J. Phys. Oceanogr. 27, 999-1017

Soloviev, A.V. and R. Lukas, 1997: Large diurnal warming events in the near-surface layer of the western equatorial Pacific warm pool. Deep-Sea Res. 44, 1055-1076

Schluessel, P., A. Soloviev, and W. Emery, 1997: Cool and freshwater skin of the ocean during rainfall. Boundary-Layer Meteorology 82, 437-472

Soloviev, A.V. and R. Lukas, 1996: Observation of spatial variability of diurnal thermocline and rain-formed halocline in the western Pacific warm pool. J. Phys. Oceanogr. 26, 2529-2538

Soloviev, A.V. and P. Schluessel, 1996: Evolution of cool skin and direct air-sea gas transfer coefficient during daytime. Boundary-Layer Meteorology 77, 45-68

Soloviev, A.V. and P. Schluessel, 1994: Parameterization of the cool skin of the ocean and of the air-ocean gas transfer on the basis of modeling surface renewal. J. Phys. Oceanogr. 24, 1339-1346

Soloviev, A.V., 1990: Coherent structure at the ocean surface in the convectively unstable conditions. Nature 346, 157-160

Kudryavtsev, V.N. and A.V. Soloviev, 1990: Slippery near-surface layer of the ocean arising due to daytime solar heating. J. Phys. Oceanogr. 20, 617-627

Soloviev, A.V., N.V. Vershinsky and V.A. Bezverchnii, 1988: Small-scale turbulence measurements in the thin surface layer of the ocean. Deep-Sea Res. 35, 1859-187

Soloviev, A.V. and N.V. Vershinsky, 1982: The vertical structure of the thin surface layer of the ocean under conditions of low wind speed. Deep-Sea Res. 29 (12A), 1437-1449

Articles in Peer-Reviewed USSR Journals

Soloviev A.V. & Bezverkhnii V.A., 1990: Coherent structure in the near-surface turbulent boundary layer of the ocean. Doklady Akademii Nauk SSSR 312(1), 218-222

Sagalevich A.M., Soloviev A.V. & Shashkov N.L., 1990:  Structure of the bottom boundary layer at presence of high-temperature hydrothermal vents. Doklady Akademii Nauk SSSR 310(3)

Voitov V.I., Soloviev A.V. & Yastrebov V.S., 1989: Hydrophysical study of the bottom boundary layer (review). Oceanology 1989, 24(6)

Kudryavtsev V.N. & Soloviev A.V., 1990: Structure of near-surface layer of the ocean during daytime heating. Izvestiya, Atmospheric and Oceanic Physics 25(5), 524-534

Volkov Yu.A., Soloviev A.V., Turenko V.V., Bezverchnii V.A., Vershinsky N.V., and Ermolaev F.M.A., 1989:  Investigation of hydrophysical fields structure of the thin surface layer of the ocean from a moving vessel. Izvestiya, Atmospheric and Oceanic Physics 25(7), 695-701

Soloviev A.V., 1988: Small-scale turbulence in the wave disturbed surface layer of the ocean. Izvestiya, Atmospheric and Oceanic Physics 24(12), 1307-1314

Kudryavtsev V.N. & Soloviev A.V., 1988: Daytime near-surface current. Doklady Akademii Nauk SSSR 303(1), 59-62

Vershinsky, N.V., B.P. Pshenichny, B.P., and Soloviev, A.V. 1987: Artificial upwelling using the energy of surface waves. Oceanology 37(3), 400-402.

Soloviev, A.V., 1987: Diurnal warming of the near-surface layer of the ocean. Marine Hydrophysical Journal 6.

Soloviev A.V., 1986: On dissipation of turbulent energy in the wind-generated wave layer of the ocean. Izvestiya, Atmospheric and Oceanic Physics 22(4), 380-388

Volkov Yu.A. and Soloviev A.V., 1986: On vertical thermal structure of near- surface layer of atmosphere above the ocean. Izvestiya, Atmospheric and Oceanic Physics 22(9), 899-903

Bezverkhny V.A., and A.V. Soloviev, 1986: Experimental data on the vertical structure of the non-stationary near-surface thermocline. Izvestiya, Atmospheric and Oceanic Physics 22 (1), 71-77

Kudryavtsev V.N., and Soloviev A.V., 1985: On parameterization of cool skin of the ocean. Izvestiya, Atmospheric and Oceanic Physics 21(2), 177-183

Azizjan G.V., Volkov Yu.A., and Soloviev A.V., 1984: Experimental investigation of vertical thermal structure of thin boundary layers of the sea and atmosphere. Izvestiya, Atmospheric and Oceanic Physics 20(6), 511-519

Vershinsky N.V., Soloviev A.V., and Zvikevich V.A., 1983: On experimental investigation of turbulent velocity fluctuations in a thin surface layer of the ocean. Izvestiya, Atmospheric and Oceanic Physics 20(12), 1324-1328

Soloviev A.V., 1982: On vertical structure of a thin surface layer of the ocean under conditions of low wind speed. Izvestiya, Atmospheric and Oceanic Physics 18(7), 751-760

Vershinsky N.V., Volkov Yu.A., and Soloviev A.V., 1981: On fine vertical structure of at thin surface layer of the ocean. Doklady Akademii Nauk SSSR 256, 694-698

Vershinsky N.V., Soloviev A.V., and Turenko V.V., 1981: Experience in recording the vertical microstructure of temperature and conductivity in the surface layer of the ocean with the aid of a free-rising profiler. Oceanology 22, 734-739

Kudryavtsev V.N. and Soloviev A.V., 1981: On thermal state of the ocean surface. Izvestiya, Atmospheric and Oceanic Physics 17, 1065-1071.

Vershinsky N.V. and Soloviev A.V., 1980: Fine structure of a thin ocean surface layer in the JASIN area. Izvestiya, Atmospheric and Oceanic Physics 16(6), 660-663

Soloviev A.V., 1979: Thin thermal structure of the ocean surface layer in the POLYMODE-77 region: Izvestiya, Atmospheric and Oceanic Physics 15, 750-754

Vershinsky N.V., Nelepo B.A., and Soloviev A.V, 1979: Microstructure of a thin surface layer of the ocean. Doklady Akademii Nauk SSSR 247, 717-720

Soloviev A.V. & Vershinsky N.V., 1978: On thin thermal structure of the ocean surface layer. Doklady Akademii Nauk SSSR 240(5), 1066-1069

Vershinsky N.V. & Soloviev A.V., 1977: A profiler for the studies of the ocean surface layer. Oceanology 17, 358-363

SPIELER, RICHARD E., Ph.D., Professor

Publications

Paddack, M.J., J.D. Reynolds, C. Aguilar, R.S. Appeldoorn, J. Beets, E. W. Burkett, P.M. Chittaro, K. Clarke, R. Esteves, A.C. Fonseca, G.E. Forrester, A.M. Friedlander, J. García-Sais, G. González-Sansón, L. K.B. Jordan, D.B. McClellan, M.W. Miller, P.P. Molloy, P.J. Mumby, I.Nagelkerken, M.Nemeth, R. Navas-Camacho, J. Pitt, N.V.C. Polunin, M.C. Reyes-Nivia, D. R.Robertson, A. Rodríguez-Ramírez, E.Salas, S.R. Smith, R. E. Spieler, M.A. Steele, I.D. Williams, C.L. Wormald, A.R. Watkinson, and I.M. Côté. 2009. Recent region-wide declines in Caribbean reef fish abundance. Current Biology 19:1-6.

Walker B.K., Jordan L.K.B., and Spieler R.S. 2009. Relationship of fish assemblages and topographic complexity on southeastern Florida coral reef habitats. JCR special Coastal LIDAR edition. in press.

Basten BL, Sherman RL, Lametschwandtner A, Spieler RE. 2007. A unique configuration among the efferent branchial arteries and splanchnic arteries in the yellow stingray, Urobatis jamaicensis: a preliminary examination. Microsc Microanal (in Press).

Morley D.M., R.L. Sherman, L.K.B. Jordan, K.W. Banks, T.P. Quinn, and R.E. Spieler.2008. Environmental Enhancement Gone Awry: Characterization of an Artificial Reef Constructed From Waste Vehicle Tires. Environmental Problems in Coastal Regions. VII: 73-87

Avalos, M.A.R., Jordan, L.K.B., Walker, B.K., Gilliam, D.S., Elvira Hinojosa, E.C., and Richard E. Spieler, R.E. 2007. Fish and Coral Reef Communities of the Parque Nacional Sistema Arrecifal Veracruzano (Veracruz Coral Reef System National Park) Veracruz, Mexico: Preliminary Results. Proc. Gulf and Caribbean Fisheries Instit. 60: 427-435.

Basten, B.L., Sherman, R.L. and Spieler, R.E. 2007. Examination of Gill Development in the Yellow Stingray, Urobatis jamaicensis: Initial Impressions. Proceedings of International Workshop on Advances in Vascular Casting

Basten BL, Sherman RL, Lametschwandtner A, Spieler RE. 2007. A unique arterial anastomosis among the efferent branchial arteries and the dorsal aorta in the yellow stingray, Urobatis jamaicensis: a preliminary examination. Microsc Microanal 13(Suppl 2):498-499

Arena, P.T., Jordan, L.K.B., and R.E. Spieler. 2006. Fish assemblages on sunken-vessels and natural reefs in southeast Florida, U.S.A. Hydrobiologia. 580: 157-171.

Fahy, E. G., Dodge, R. E., Fahy, D. P., Quinn, T. P., Gilliam, D. S., and R. E. Spieler. 2006. Growth and survivorship of scleractinian coral transplants and the effectiveness of plugging core holes in transplant donor colonies. Proc. 10th International Coral Reef Symposium, 1657-1664.

Fahy, D.P., Richard E. Spieler and William C. Hamlett. Preliminary observations on the reproductive cycle and uterine fecundity of the yellow stingray, Urobatis jamaicensis, (chondrichthyes: elasmobranchii: myliobatiformes: urolophidae) in Southeast Florida, U.S.A. Raffles Bull Zool. (in press)

Jordan, L.K.B., and R.E. Spieler. 2006. Implications of natural variation of fish assemblages to coral reef management. Proc. 10th Int. Coral Reef Sym. 1391-1395.

Sherman, R.L. and R.E. Spieler. 2006 Tires: unstable materials for artificial reef construction. WIT Transactions on Ecology and the Environment vol 88: Environmental Problems in Coastal Regions. 215-223.

Jordan, Lance K.B., David S. Gilliam and Richard E. Spieler. 2005 Effects of module spacing on the formation and maintenance of fish assemblages on artificial reefs. Journal of Experimental Marine Biology. 326, 170-186.

Dere, E., M. A. De Souza-Silva, B. Topic, R.E. Spieler, J.S. Lin, H.L. Haas and J.P. Huston. 2004. Changes in motoric, exploratory and emotional behaviors and neuronal ACh content and 5-HT turnover in histidine-decarboxylase KO-mice. European J. Neurosci. 20: 1051-1058.

Baron, R.M., L.K.B. Jordan and Richard E. Spieler. 2004. Characterization of the marine fish assemblage associated with the nearshore hardbottom of Broward County Florida, USA. Estuar Coast Shelf Sci. 60: 431-443.

Dere E, M.A. De-Souza-Silva, B. Topic, R.E. Spieler, H.L. Haas and JP Huston. 2003. Histidine-decarboxylase knockout mice show deficient nonreinforced episodic object memory, improved negatively reinforced water-maze performance, and increased neo- and ventro-striatal dopamine turnover. Learn Mem 10:510-519.

Arena, P.T., Jordan, L.K.B., Sherman, R.L., Harttung, F.M. and R.E. Spieler. 2002. Presence of Juvenile Blackfin Snapper, Lutjanus buccanella, and Snowy Grouper, Epinephelus niveatus, on Shallow-water Artificial Reefs. Proceedings of the 55th Gulf and Caribbean Fisheries Institute 55: 700-712

Burns, T.A., J.P. Huston and R.E. Spieler. 2002. Circadian variation of brain histamine in goldfish. Brain Res. Bull. 59(4): 299-301.

Walker, B., B.Henderson and RE. Spieler. 2002. Fish assemblages associated with artificial reefs of concrete aggregates or quarry stone offshore Miami Beach, Florida USA. Aquat. Living Resour. 15: 95-105.

Spieler R.E. 2001. Circadian Timing of Meal-Feeding and Growth in Fishes. Reviews in Fisheries Science. 9(3): 115-131.

Sherman, R.L., D.S.Gilliam and R.E. Spieler. 2001. Site-dependant differences in artificial reef function: Implications for coral reef restoration. Bull. Mar. Sci. 69 (2):1053-1056.

Spieler R., D. Gilliam, and R. Sherman. 2001. Artificial substrate and coral reef restoration: What do we need to know to know what we need. Bull. Mar. Sci. 69(2): 1013-1030.

Sherman, R.L., Gilliam, D.S. and R.E. Spieler. 2001. Artificial reef design: void space, complexity and attractants. ICES Journal of Marine Science. 59(s): S196-S200.

Manire, C., R. Hueter, E. Hull, R. Spieler, 2001: Serological changes associated with gill-net capture and restraint in three species of sharks. Trans. Am. Fish Soc. 130 (6), 1038-1048.

Sherman, R.L., D.S. Gilliam and R.E. Spieler. 2001. Effects of refuge size and complexity on recruitment and fish assemblage formation on small artificial reefs. Proc. 52nd Annual Gulf Caribb. Fish. Instit. 455-467.

Mattioli, R., J.P.Huston, and R.E. Spieler.2000. ACTH4-10, Substance P and Dizolcipine (MK-801). Accelerate Functional Recovery After Hemilabyrinthectomy in Goldfish. Neuroplasticity. 7(4): 291-301.

Hull, E., C. Manire, R. Hueter and R. Spieler. Serological changes in three species of sharks associated with capture and restraint. (In manuscript).

Nelson C.A., R. Mattioli, J.P. Huston and R.E. Spieler. 1998. The effects of the H₁ histamine antagonist chlorpheniramine on learning and memory in goldfish, Carassius auratus. (submitted).

Spieler R., D. Gilliam, R. Sherman, K. Banks, C. Corbett-Elder and L. Jordan. Artificial Reef Research In Broward County: The Last Six Years. IN: Florida Artificial Reef Summit 1998. Horn, W. (Ed). Florida Dept. Environ. Protection. (in press).

Heilman M.J. and R.E. Spieler. The daily feeding rhythm to demand feeders and the effects of timed meal-feeding on the growth of juvenile Florida pompano, Trachinotus carolinus. Aquaculture(in press).

Hamlett, W.C., M. Jezior and R. Spieler. Ultrastructural analysis of folliculogenesis in the ovary of the yellow spotted stingray, Urolophus jamaicensis. Annals of Anat. J. Elisha Mitchell Sci. Soc. (in press).

Hamlett, W.C., M.K. Hysell, J. Galvin and R. Spieler. Reproductive accommodations for gestation in the Atlantic guitarfish, Rhinobatoslentiginosus.

Sherman, R.L., D.S. Gilliam and R.E. Spieler. A preliminary examination of depth associated spatial variation in fish assemblages on small artificial reefs. Jour. Of Appl. Ichth. (In Press)

Sherman, R.L., D.S. Gilliam and R.E. Spieler. Differences in length estimates in fish census data among experienced researchers. Proceed. International Workshop: Fish Visual Census in Marine Protected Areas. Sicilian Naturalist. (In Press).

Sherman, R.L. and R.E. Spieler. Examination of gill vasculature of the Yellow Stingray (Urolophus jamaicensis), by SEM observations of resin casts. Proceed. Ninth International Congress of European Ichthyologists & quot;Fish Biodiversity". Ital. Journal of Zool. (In Press)

Mattioli, R; CA; Nelson, JP; Huston, RE. Spieler, 1998. Conditioned place-preference analysis in the goldfish with the H-1 histamine antagonist chlorpheniramine. Brain Research Bulletin. 45 (1 ):41-44.

Gilliam, D., K. Banks and R.E. Spieler. 1995. Evaluation of a tire-concrete aggregate for artificial reef construction. ECOSET Proc. 1: 345-350.

Spieler, R.E., Albert C. Russo and Daniel N. Weber. 1995. Waterborne lead affects circadian variations of brain neurotransmitters in fathead minnows. Bull. Environ. Contamin. Toxicol. 55: 412-418.

*Spieler, R.E., D.S. Gilliam, K. Banks, and B. Mostkoff, 1994. Evaluation of a novel material for recycling tires into artificial reefs: A work in progress. Conf. of Florida Dept. of Environ. Protection and the Organization for Artificial Reefs, May 4-6, 1994, Tallahassee, FL, 107-117.

*Weber, D.N. and R.E. Spieler, 1994. Behavioral mechanisms of metal toxicity in fishes. In: Molecular Biological Approaches to Aquatic Toxicology, D.C. Malins and G.M. Ostrander, Eds. Lewis Publishers, Inc. Boca Raton, FL, 421-467.

Spieler, R.E., 1992. Circadian rhythms in fishes and their implications for research. IN: The Care and Use of Amphibians, Reptiles and Fish in Research. Schaeffer, D.O., Kleinow, K.M. and Krulisch, L.,Eds., Scientists Center for Animal Welfare, Bethesda, MD, 161-166.

Spieler, R.E., 1992. Feeding entrained circadian rhythms in fishes. IN: Rhythms in Fishes, Ali, M.A. (Ed.). Plenum. New York, NY, 137-147.

*Weber, D.N., S. Eisch, R.E. Spieler, and D.H. Petering, 1992. Metal redistribution in largemouth bass (Micropterus salmoides) in response to restrainment stress and dietary cadmium: role of metallothionein and other metal-binding proteins. Comp. Biochem. Physiol., 101C(2), 255-262.

*Spieler, R.E. and D.N. Weber, 1991. Effects of waterborne lead on circulating thyroid hormones and cortisol in rainbow trout. Med. Sci. Res., 19, 477.

*Weber, D.N., A.Russo, D.B. Seale and R.E. Spieler, 1991. Waterborne lead affects feeding abilities and neurotransmitter levels of juvenile fathead minnows (Pimephales promelas). Aquatic Toxicology, 21, 71-80.

*Petering, D.H., M.S. Goodrich, W. Hodgeman, S. Krezoski, D. Weber, C.F. Shaw III, R.E. Spieler, and L.D. Zettergren, 1990. Metal-binding proteins and peptides for the detection of heavy metals in aquatic environments. IN: Biomarkers for Environmental Contamination, McCarthy, J. and Schugart, L. (Eds.) Lewis Publishers, Inc., Boca Raton, FL pp. 239-254.

Spieler, Richard E. 1989. Chronobiology and Aquaculture: Neglected Opportunities. IN: Chronobiology: Its Role in Clinical Medicine, General Biology and Agriculture, Part B. Pauly, J., Reiter, R. and Hays, D. (Eds.), Alan R. Liss Inc., New York,NY. pp 905-920.

Spieler, Richard E. and John J. Cloughterty. 1989. Free-running locomotor rhythms of feeding-entrained goldfish. Zool. Sci. 6:313-316.

Spieler, Richard E., 1988. The vanishing minnow and other fish stories. LORE, 38(1), 28-30.

Weber, Daniel N. and Richard E. Spieler, 1987. Effects of the light-dark cycle and scheduled feeding on behavioral and reproductive rhythms of the cyprinodont fish, Medaka, Oryzias latipes. Experientia, 43, 621-624.

Spieler, Richard E., Teresa A. Noeske-Hallin, Teresa A. DeRosier and Hugh A. Poston, 1987. Some dietary amino acids and meal-feeding phase shifts of locomotor activity. Med. Sci. Res., 15, 921-922.

Noeske-Hallin, Teresa A., Richard E. Spieler, Nick C. Parker, Mary Anna Suttle, 1985. Feeding time differentially affects fattening and growth of channel catfish. J. Nutr., 115, 1228-1232.

Emata, A. C., Albert H. Meier, Richard Spieler, 1985. Temporal variations in gonadal and body fat responses to daily injections of 5-HTP and DOPA in gulf killifish, Fundulus grandis. Exp. Zool., 235, 29-35.

Abstracts

Jordan, L.K.B., K.C., Lindeman, and R.E. Spieler. 2008 Depth-variable predation in post-settlement stages of coral reef fishes. 11 ICRS, Ft Lauderdale FL.

Kilfoyle, K., M.A. Rangel, R.E. Dodge, and R.E. Spieler. 2008. Coral reef restoration: Standardized module intervention and monitoring program in Mexico, preliminary results. 11 ICRS, Ft Lauderdale FL.

Robinson, J., L. Robinson, B. Buskirk, and R.E. Spieler. 2008. Effects of a novel invertebrate substrate on fish assemblages associated with concrete modules. 11 ICRS, Ft Lauderdale FL.

Freeman, J.A., T.P. Quinn, L.K.B.. Jordan, K. Kilfoyle, and R.E. Spieler. 2008. Comparison of fish assemblages between mitigation boulder reef and neighboring natural hardbottom in Broward County, Florida, USA. 11 ICRS, Ft Lauderdale FL.

Morley, D.M., R.L. Sherman, L.K.B., Jordan, K. Banks, and R.E. Spieler. 2008. Restoring an artificial "enhancement": baseline data to assess strategy effectiveness and future mitigation. 11 ICRS, Ft Lauderdale FL.

Patterson, B.R., L.K.B. Jordan, D.R. Bryan, and R.E. Spieler. 2008. A comparison of reef fish assemblages on the east and west side of Eleuthera, Bahamas. 11 ICRS, Ft Lauderdale FL.

Sherman, R.L., Jordan, L.K.B., and Spieler, R.E. 2006. Tires: unstable materials for artificial reef construction. Sixth International Conference on Environmental Problems in Coastal Regions Including Oil and Chemical Spill Studies. June 5-7, Rhodes, Greece.

Patterson, R.B., Jordan, L.K.B., Sherman, R.L., Arena, P.T. and Spieler, R.E. 2006.A Comparison of Reef Fish Assemblages on the East and West Sides of Central Eleuthera, Bahamas. Fisheries Society of the British Isles Annual International Symposium. July 10-14, Aberdeen, Scotland.

Sherman, R.L., Lametschwandtner, A., and R.E. Spieler. 2005. Structural Variation In Gill Vasculature Among Some Batiod Elasmobranchs Examined Using Corrosion Casting And SEM. Microscopy & Microanalysis 2005. Honolulu, Hawaii 31 July-4 August 2005.

Gilliam, D.S., Spieler, R.E., Jordan, L.K.B., Monty, J.A., Fisher, L.E., Banks, K., and Dodge, R.E. 2004 Long-term monitoring of coral communities and reef fish assemblages off southeast Florida, USA. AAUS 2004, San Diego, Ca.

Ferro, F., Jordan, L.K.B, Arena, P.T., and Spieler, R.E. 2004. Coral reef fish assemblages offshore Broward County, Florida: a baseline data set for determining need and evaluating effectiveness of management strategies. Proc. 10th Int. Coral Reef Sym., Okinawa, Japan. (Oral presentation by Lance Jordan)

Patterson, R.B., Jordan, L.K.B., Bryan, D.R., and Spieler, R.E. 2004. A comparison of reef fish assemblages on the east and west sides of central Eleuthera, Bahamas. Proc. 57th Annual Gulf and Caribbean Fisheries Institute Meeting, St. Petersburg, Florida, USA.

Jordan, L.K.B., and Spieler, R.E. 2004. Implications of natural variation of fish assemblages to coral-reef management. Proc. 1st Nat. Conf. Ecos. Rest. Orlando, FL. December 6-December 10, 2004.

Arena, P.T., Jordan, L.K.B., Quinn, T.P., Hemphill, A.H., Bryan, D.B., Buskirk, B. and Spieler, R.E. 2003 Fish colonization of a newly deployed vessel-reef off southeast Florida: preliminary results. Proc. 56th Annual Gulf and Caribbean Fisheries Institute Meeting, Tortola, BVI. ,p>

Sherman, R.L., Sulikowski, J. and R.E. Spieler. 2003. Examination of structural differences in gill vasculature among some batoid elasmobranchs using corrosion casting and SEM. International Workshop for Advances in Vascular Casting. 12-15 July 2003. Salzburg, Austria

Sherman, R.L., D.S. Gilliam and R.E. Spieler. 1997. Depth associated spatial variation in fish recruitment on small artificial reefs. Annual Meeting of the Society for Integrative and Comparative Biology. 4-8 January 1998, Boston, Massachusetts. Amer. Zool.

Gilliam, D.S., R.L. Sherman, K. Banks, and R.E. Spieler. 1997. The importance of post-settlement competition on juvenile reef fish recruitment in South Florida. 77th Annual Meeting of the American Society of Ichthyologists and Herpetologists, June 25-July 1, 1997, Seattle, Washington.

Gilliam, D.S., R.L. Sherman, and R.E. Spieler. 1997 The importance of post-settlement predation on juvenile reef fish recruitment in south Florida. Annual Meeting of the American Fisheries Society, August 25-29, 1997, Monterey, California.

Gilliam, D.S., R.L. Sherman, K. Banks, and R.E. Spieler. 1997 Artificial reef studies of Broward County. 17th Annual Meeting of the Florida Chapter American Fisheries.

Gilliam D.S. and R.E. Spieler 1996. Juvenile fish recruitment on south Florida reefs. 8th International Coral Reef Symposium. 71.

Gilliam D.S., R.L. Sherman and R.E. Spieler. 1996. Fish recruitment to artificial reefs in shallow and deep water off southeast Florida. ASIH 76 Annual Mtg. 153.

Banks, K. and R. E. Spieler, 1996. Collaboration of environmental managers and academic scientists in an artificial reef program: the Broward County experience. Org.Wildlife Fish.Info.Manag. Annual Mtg.

Gilliam D.S., R.L. Sherman and R.E. Spieler. 1996. Fish recruitment to artificial reefs in shallow and deep water off southeast Florida. ASIH 76 Annual Mtg. 153

Gilliam D.S. and R.E. Spieler 1996. Juvenile fish recruitment on south Florida reefs. 8th International Coral Reef Symposium. 71.

Mattioli, R., C.A. Nelson, J.P. Huston and R.E. Spieler 1996. Reinforcing properties of chlorpheniramine in goldfish. Soc. for Neurosciences, 26 Annual Mtg. 29.

THOMAS, JAMES D., Ph.D., Professor

Publications

Thomas, J.D., and L. Watling. A new genus and species of Didymochelid amphipod from deep water hexactinellid sponges (Crustacea:Amphipoda:Didymocheliidae). Bulletin of the Yale Peabody Museum. In press.

White, K.N. & J.D. Thomas. Leucothoidae. In: Lowry, J.K. & Myers, A.A. (eds), Amphipoda of the Great Barrier Reef, Australia. Zootaxa. In press.

Richards, V.P., J.D. Thomas, M.J. Stanhope and M.S. Shivji. 2007. Genetic connectivity in the Florida reef system: comparative phylogeography of commensal invertebrates with contrasting reproductive strategies. Molecular Ecology 16(1):139-157.

Thomas, J.D. and K.N. Klebba. 2007. New species and host associations of commensal leucothoid amphipods from coral reefs in Florida and Belize (Crustacea: Amphipoda). Zootaxa: 1494: 1-44, 27 figures.

Thomas, J.D. and K.N. Klebba. 2006. Studies of commensal leucothoid amphipods: two new sponge-inhabiting species from south Florida and the western Caribbean. Journal of Crustacean Biology 26(1): 13-22.

Bernardo Vargas-Angel, Susan B. Colley, S, Michael Hoke, and James D.Thomas. 2005. The reproductive seasonality and gametogenic cycle of Acropora cervicornis in Broward County, Florida, U.S.A. Coral Reefs 25(1):110-122.

Richards, V. P., James D. Thomas, Michael J. Stanhope and Mahmood S. Shivji. 2004. High levels of gene flow in commensal, brooding marine amphipods: mitochondrial DNA variation in Florida populations of the Leucothoe spinicarpa species complex. 10th International Coral Reef Symposium, Okinawa, Japan, June 28 - July 2, 2004.

Vargas-Angel, B., J.D. Thomas, S.M. Hoke. 2003. High Latitude Acropora cervicornis thickets off Fort Lauderdale, Florida, USA. Coral Reefs 465-475.

Crowe, S.E. and J. D. Thomas. 2002. Abundance and Distribution of Commensal Amphipods from Common Marine Sponges of Southeast Florida. Special volume, Modern approaches to the study of Crustacea, Springer-Verlag.

B. Vargas-Angel, S.B. Colley and J.D. Thomas. 2004. Reproductive seasonality and gametogenic cycle of Acropora cervicornisin Broward County, Florida, USA. (in press).

B. Vargas-Angel and J.D. Thomas. 2003. Sexual reproduction of Acropora cervicornis in near-shore waters off Fort Lauderdale, Florida, U.S.A. Coral Reefs 21(1):25-26.

S. E. Crowe and J. D. Thomas. 2002. Abundance and Distribution of Commensal Amphipods from Common Marine Sponges of Southeast Florida. Special volume, Modern approaches to the study of Crustacea, Springer-Verlag, 12 pages.

Thomas, J.D. 2002. Book Review: Marine Protected Areas: Tools for Sustaining Ocean Ecosystems by; The Committee on the Evaluation, Design, and Monitoring of Marine Reserves and Protected Areas in the United States. Ocean Studies Board, Commission on Geosciences, Environment, and Resources. National Research Council (2001). Coral Reefs 21:226-228.

Thomas, J.D. Preface. Proceedings of the National Coral Reef Institute's International Conference on Scientific Aspects of Coral Reef Assessment, Monitoring and Restoration. Bulletin of Marine Science, 69(2): ii-iv, 289-1056. (Printed in Jan. 02).

Thomas, J.D., and R.E. Dodge. 1999. Quick Action Needed for World's Declining Coral Reefs. Results of the International Conference on Scientific Aspects of Coral Reef Assessment, Monitoring, and Restoration. Earth Systems Monitor, U.S. Dept. Commerce/NOAA, 10(1): 12-13, 16.

Thomas, J.D. 1999. Moolapheonoides utmas, new species, from Coral Reefs in the Madang Lagoon, Papua New Guinea (Amphipoda, Cyproideidae), Bulletin of Marine Science.(in press).

Sotka, E.E., M.E. Hay, and J.D. Thomas. 1998. Host-plant specialization by a non-herbivorous amphipod: advantages for the amphipod and costs for the seaweed. Oecologia, 25ms pp. (in press)

Thomas, J.D. 1997. Systematics and Phylogeny of the commensal amphipod family Anamixidae (Crustacea: Amphipoda). Records of the Australian Museum, Volume 49:35-98, figures 1-27-187.

Thomas, J.D. 1997. Ecology and behavior of Maxillipius commensalis, a gorgonophile amphipod from Madang, Papua New Guinea (Crustacea: Amphipoda: Maxillipiidae). Bulletin of Marine Science, 58(1):314-326, figs. 1-5.

Thomas, J.D.. 1996. Using Marine Invertebrates to Establish Research and Conservation Priorities. In Biodiversity II: Understanding and Protecting our Biological Resources. Chapter 24, 357:369. Eds. M.L. Reaka-Cudla, D. Wilson, and E.O. Wilson. National Academy Press, 551 pages.

Lowry, J.K., A.A.Myers, M. W. Jebb, and J.D.Thomas. 1995. Amphipoda (Crustacea) of the Madang Lagoon, Papua New Guinea. Geology Oceanography and Biology Series. Records of the Australian Museum, 174 pp.

Thomas, J.D. and L.D. McCann. 1995. Chapter 2. The Families Argissidae, Dexaminidae, Eusiridae, Gammaridae, Leucothoidae, Melphidippidae, Oedicerotidae, Pardaliscidae, Phoxocephalidae, Podoceridae, Stegocephalidae, Stenothoidae, Stilipedidae, Synopiidae, and Urothoidae. 116 pp, 94 figs. (galley). In: A Taxonomic Atlas to the Fauna of the Santa Maria Basin. Eds. L. Watling and P. Scott.

Watling, L. and J.D. Thomas. 1995. Chapter 1. Introduction to the Amphipoda. 20 pp, 30 figs. (galley). In: A Taxonomic Atlas to the Fauna of the Santa Maria Basin. Eds. L. Watling and P. Scott.

Thomas, J.D. and M. Ortiz. 1995. Leucothoe laurensi, n. sp., a new species of Leucothoid amphipod from Cuban Waters (Crustacea: Amphipoda: Leucothoidae). Proceedings of the Biological Society of Washington, 108(4):613-616, figs. 1-2.

Thomas, J.D. 1993. J. Laurens Barnard: a personal glimpse. Journal of Natural History 27:725-726.

Thomas, J.D. 1993. Biological monitoring and tropical biodiversity in marine environments: a critique with recommendations, and comments on the use of amphipods as bioindicators. Journal of Natural History. 27:795-806.

Thomas, J.D. 1992. Podocerus kleidus, new species, from the Florida Keys (Crustacea, Amphipoda, Dulichiidae). Bulletin of Marine Science51(3):309-314, figs. 1-3.

Thomas, J.D. 1992. J. Laurens Barnard (1928-1991). Journal of Crustacean Biology, 12(2):324-326.

Thomas, J.D. 1992. Podocerus chelonophilus, a testudinous amphipod newly recorded from the Western Atlantic Ocean. Bulletin of Marine Science 50(1):108-116, figs. 1-2.

Lowry, J.K., and J. D. Thomas. 1991. A new species of Cerapus from Cudjoe Channel, Lower Florida Keys, USA, with notes on male behaviour (Crustacea: Amphipoda: Corophioidea). Journal of Natural History 25:1461-1467, figs. 1-4.

Thomas, J.D., and J.L. Barnard. 1991. Guernea ipilya and G. yamminye, new species (Crustacea,Amphipoda,Dexaminidae), from the Great Barrier Reef, Australia. Memoirs of the Museum of Victoria 52 (2):299-310, figs. 1-6.

Barnard, J.L., K. Sandved, and J.D. Thomas. 1991. Tube building behavior of Grandidierella, and two species of Cerapus. Hydrobiologia 223:239 -254, 1 figure.

Thomas, J.D., and J.L. Barnard. 1991. Kamaka taditadi, a new marine species from Papua New Guinea (Crustacea, Amphipoda, Corophioidea) . Memoirs of the Museum of Victoria 52(2):311-318, figs. 1-3.

Barnard, J.L. and J.D. Thomas. 1991. Yhi yindi, a new genus and species of Paracalliopiidae from the Great Barrier Reef (Crustacea:Amphipoda). Memoirs of the Museum of Victoria 52(2):283-289, figs. 1-3.

Thomas, J.D., and J.L. Barnard. 1991. Wombalano yerang, a new genus and species of Corophiidae (Crustacea:Amphipoda) from the Great Barrier Reef, Australia. Memoirs of the Museum of Victoria 52(2):319-324, figs. 1-4.

Thomas, J.D., and J.L. Barnard. 1991. Two new species of Netamelita from the Caribbean Sea (Crustacea:Amphipoda:Gammaridea). Proceedings of the Biological Society of Washington, 104(3):583-592, figs. 1-5.

Thomas, J.D., and J.L. Barnard. 1991. A review of the genus Iphimedia (Crustacea:Amphipoda) with descriptions of three new species from Australia, Papua New Guinea and Florida. Invertebrate Taxonomy 5:469-485, figs. 1-9.

Thomas, J.D., and J.L. Barnard. 1991. Photis trapherus, a new elephantine species from the Caribbean Sea (Crustacea: Amphipoda). Proceedings of the Biological Society of Washington, 104(1):96-100, 3 figs. 1-3.

Thomas, J.D., and J.L. Barnard. 1991. Jerbarnia stocki, a new species from the Barrier Reef (Crustacea, Amphipoda). Beaufortia 41(24):169-176, figs. 1-3.

Thomas, J.D., and J.L. Barnard. 1990. Gitana dominica, a new species from the Caribbean Sea (Amphipoda: Amphilochidae). Proceedings of the Biological Society of Washington, 103(3):617-623, figs. 1-3.

Barnard, J.L., and J.D. Thomas. 1990. Ensayara jumanae, a new species from Belize, Caribbean Sea (Amphipoda, Lysianassidae). Proceedings of the Biological Society of Washington, 103(1):120-126, figs. 1-3.

Barnard, J.L. and J.D.Thomas. 1989. A new species, Ampelisca burkei, (Crustacea,Amphipoda) from Florida. Proceedings of the Biological Society of Washington, 102(2):375-384, figs. 1-5.

Barnard, J.L. and J.D.Thomas. 1989. Four new species of Synopiidae from the Carribean region (Crustacea:Amphipoda). Proceedings of the Biological Society of Washington, 102(2):362-374, figs. 1-6.

Thomas, J.D., and J.L. Barnard. 1989. Gammaropsis arawakia, a new species of marine Amphipoda (Crustacea) from Jamaica. Proceedings of the Biological Society of Washington, 102(1):89-94, figs. 1-3.

Thomas, J.D., and J.L. Barnard. 1989. Elasmopus balkomanus, a new species from the Florida Keys (Crustacea,Amphipoda). Proceedings of the Biological Society of Washington, 101(4):234-239, figs. 1-3.

Barnard, J.L., and J.D. Thomas. 1988. Ipanemidae, new family, Ipanema talpa, new genus and species, from the surf zone of Brazil (Crustacea:Amphipoda:Haustoroidea). Proceedings of the Biological Society of Washington, 101(3):614-621, figs. 1-4.

Barnard, J.L., and J.D. Thomas. 1988. Vadosiapus copacabanus, a new genus and species of Exoedicerotidae from Brazil (Crustacea,Amphipoda). Proceedings of the Biological Society of Washington. 101(2):366-374, figs. 1-3.

Barnard. J.L., J.D. Thomas, K.B. Sandved. 1988. Behavior of gammaridean Amphipods (Crustacea): Corophium Grandidierella Podocerus, and Gibberosus (American Megaluropus) in Florida. Crustaceana, Special Supplement No. 13:234-244.

Thomas, J.D. 1987. Audulla chelifera (Indo-Pacific) from the Caribbean Sea (Crustacea:Amphipoda). Proceedings of the Biological Society of Washington, 100(2):364-370, figs. 1-4.

Barnard, J.L., and J.D. Thomas. 1987. A new species of Chevalia from the Caribbean Sea. Proceedings of the Biological Society of Washington, 100(3): 532-542, figs. 1-5.

Barnard, J.L. and J.D. Thomas. 1987. New species of Neomegamphopus from tropical America (Marine Amphipoda, Crustacea). Proceedings of the Biological Society of Washington, 100(1):147-163, figs. 1-6.

Thomas, J.D., and J.L. Barnard. 1986. Two species of Hornellia (subgenus Metaceradocus) from the Florida Keys and Belize (Amphipoda,Melphidippoidea). Bulletin of Marine Science, 38(3):477-486, figs 1-6.

Thomas, J.D., and J.L. Barnard. 1986. New genera and species of the Megaluropus group (Amphipoda,Megaluropidae) from American Seas. Bulletin of Marine Science, 38(3):442-476, figs. 1-15.

Barnard, J.L., J.D. Thomas, and J. Clark. 1986. Coral Reef Amphipods of Jamaica. in, Caribbean Coral Reef Ecosystems, Report 1986, National Museum of Natural History, K. Ruetzler, editor, p.48.

1986. A comparison of amphipod fauna from mangrove and coral reef habitats. Caribbean Coral Reef Ecosystems, Report 1986, National Museum of Natural History, K. Ruetzler, editor, p. 19.

1986. Diel migration of amphipods from coral reef substrates. Caribbean Coral Reef Ecosystems, Report 1986, National Museum of Natural History, K. Ruetzler, editor, p.42.

Thomas, J.D., and J.L. Barnard. 1985. A new marine genus of the Maera group (Crustacea:Amphipoda) from Belize. Proceedings of the Biological Society of Washington, 98(3):630-635, figs. 1-3.

Thomas, J.D., and J.L. Barnard. 1985. Two new species of two new gammaridan genera (Crustacea:Amphipoda) from the Florida Keys. Proceedings of the Biological Society of Washington, 98(1):191-203, figs. 1-7.

Thomas, J.D., and J.L. Barnard. 1985. Perioculodes cerasinus, n. sp., the first record of the genus from the Caribbean Sea (Amphipoda:Oedicerotidae). Proceedings of the Biological Society of Washington, 98(1):98-106, figs. 1-3.

Barnard, J.L., and J.D.Thomas. 1984. Two new species of the Siphonoecetes complex from the Arabian Gulf and Borneo (Crustacea:Amphipoda). Proceedings of the Biological Society of Washington, 97(4):864-881, figs. 1-9.

Thomas, J.D., and J.L. Barnard. 1984. Acanthohaustorius pansus, a new species of sand-burrowing amphipod from Looe Key Reef, Florida Keys, with redescription and distribution data of Acanthohaustorius bousfieldi Frame, 1980 (Amphipoda: Haustoriidae). Proceedings of the Biological Society of Washington, 97(4):909-926, figs. 1-9.

Thomas, J.D. 1983. Discovery of a majid host for the commensal amphipod Stenothoe symbiotica Shoemaker, 1956. Bulletin of Marine Science, 34(3):484-485.

Barnard, J.L., and J.D. Thomas. 1983. A new species of Amphilochus from the gorgonian Ptergorgia anceps in the Caribbean Sea. Festschrift for Dr. Pillai. Selected Papers on Crustacea:179-187, figs. 1-4./P>

Thomas, J.D. 1983. Curidia debrogania, a new genus and species of amphipod (Crustacea:Ochlesidae) from the barrier reefs of Belize. Proceedings of the Biological Society of Washington, 96(1):127-133, figs. 1-3.

Thomas, J.D., and J.L. Barnard. 1983. Transformation of the Leucothoides morph to the Anamixis morph (Amphipoda). Journal of Crustacean Biology, 3(1): 154-157.

Thomas, J.D., and J.L. Barnard. 1983. The Platyischnopiidae of the Americas (Crustacea:Amphipoda). Smithsonian Contributions to Zoology, 375:1-33, figs. 1-12.

Thomas, J.D., and G. W. Taylor. 1981. Mouthpart morphology and feeding strategies of the commensal amphipod Anamixis hanseni Stebbing. Bulletin of Marine Science, 31(2):462-467, figs. 1-5.

Thomas, J.D. 1979. Occurrence of the amphipod Leucothoides pottsi Shoemaker in the tunicate Ecteinascidia turbinata Herdman from Big Pine Key, Florida. Crustaceana, 37(1):107-109.

Thomas, J.D. 1979. Redescription of the wood-rasping amphipod Tropichelura gomezi Ortiz, with notes on its ecology. Proceedings of the Biological Society of Washington, 92(4):863-872, figs. 1-4.

Thomas, J.D.,and R.W. Heard. 1979. A new species of Cerapus Say 1817 (Crustacea:Amphipoda) from the northern Gulf of Mexico with notes on its ecology. Proceedings of the Biological Society of Washington, 92(1):98-105, figs. 1-4.

Thomas, J.D. 1976. A survey of gammarid amphipods of the Barataria Bay, Louisiana region. Contributions to Marine Science, 20:87-111.

Thomas, J.D. 1976. Benthos, in Louisiana Offshore Oil Port, An Environmental Baseline Study, 3:32pp.

Thomas, J.D. 1971. Studies on the fishes of Barataria Bay, Louisiana, an estuarine community. Coastal Studies Bulletin, 6:56-66.

Thomas, J.D. 1970. Some notes on fish collected in the Barataria Bay, Louisiana Region. Coastal Studies Institute Bulletin, 5:35-42.

Abstracts

Thomas, J.D. 2006. Marine Hotspots Revisited. Association of Limnologists and Oceanographers and The Oceanic Society Annual meeting, February 20-24, 2006, Honolulu, Hawaii.

Thomas, J.D. 2005. Unexplored diversity and cryptic species in Leucothoid amphipods: Status, progress, and needs. XII International Colloquium on Amphipoda, National University of Ireland, Cork, July 24-26.

Thomas, J.D. 2004. Marine hotspots revisited. In: Shallow water reefs as predictors of diversity in deep-sea coral. Association of Limnologists and Oceanographers and The Oceanic Society Annual meeting, 15-20 February 2004, Honolulu, Hawaii.

Thomas, J.D. 2002. Predicting biodiversity "hotspots" in coral reefs: combining amphipod phylogenies and geotectonics as a proxy to identify areas of composite evolutionary diversity, International Society for Reef Studies, Cambridge, England, September 3-7.

Thomas, J.D. 2001. Establishing research and conservation priorities in coral reef ecosystems: the risk assessment paradigm, Florida Association of Benthologists (FAB), Long Key, FL, October 16-19.

Thomas, J.D. 2000. A new model for identifying evolutionary diversity in coral reefs using marine invertebrates: A synthesis of geology and biodiversity. Abstract, 9th International Coral Reef Symposium, Biodiversity Mini-symposium, Bali, Indonesia, October 23-27.

Thomas, J.D., and J.L Robinson. 2000. Measure of mesobenthic reef diversity: A pilot study using 3-dimensional artificial substrates as a surrogate for natural substrate. Abstract 9th International Coral Reef Symposium, Bali, Indonesia, October 23-27.

Thomas, J.D., R.E. Dodge, and D.S. Gilliam. 2000. Occurrence of staghorn coral (Acropora cervicornis) outcrops at high latitudes in near shore waters of Ft. Lauderdale, FL., USA. Abstract 9th International Coral Reef Symposium, Bali, Indonesia, October 23-27.

Thomas, J.D. 2000. "A model for siting marine protected areas in coral reefs: A synthesis of geology and biodiversity" Society of Integrative and Comparative Biology, Atlanta, GA, 6-8 January, 2000.

Thomas, J.D. 1998. "Non-indigenous species in managed reef systems: is there a problem?" Society of Integrative and Comparative Biology, Boston, MA, 4-6 January, 1998.

Thomas, J.D. 1998. "Bioinvasions of marine invertebrates in coral reef systems: is it happening?" Benthic Ecology Meeting, Melbourne, FL, 12-15 March, 1998.

Sotka, Erik, M.E. Hay and J.D. Thomas. 1997. "How to specialize on a plant without eating it: an unusual amphipod-seaweed association and its negative effects on the host ", Benthic Society Annual Meeting, Portland Maine, April 1997.

Sotka, Erik, M.E. Hay and J.D. Thomas. 1997. "How to specialize on a plant without eating it: an unusual amphipod-seaweed association and its negative effects on the host ", Annual Meeting, Ecological Society of America, Albuquerque, NM, August 1997.

Thomas, J.D.. 1996. Extreme Levels of Marine Invertebrate Biodiversity in New Guinea, in, Coral Reefs: Global Change and Biodiversity Loss. AAAS Annual Meetieng and Science Innovation Exposition, (AIMSIE) Baltimore, Maryland, February 8-13.

Guidebooks & Keys

Thomas, J.D. and L.D. McCann. 1995. Chapter 2. The Families Argissidae, Dexaminidae, Eusiridae, Gammaridae, Leucothoidae, Melphidippidae, Oedicerotidae, Pardaliscidae, Phoxocephalidae, Podoceridae, Stegocephalidae, Stenothoidae, Stilipedidae, Synopiidae, and Urothoidae. 116 pp, 94 figs. (galley). In: A Taxonomic Atlas to the Fauna of the Santa Maria Basin. L. Watling and P. Scott, editors.

Watling, L. and J.D. Thomas. 1995. Chapter 1. Introduction to the Amphipoda. 20 pp, 30 figs. (galley). In: A Taxonomic Atlas to the Fauna of the Santa Maria Basin. L. Watling and P. Scott, editors.

Thomas, J.D. 1993. Identification Manual for the Marine Amphipoda: (Gammaridea) I. Common Coral Reef and Rocky Bottom Amphipods of South Florida. Florida Department of Environmental Protection:83 pp, figs. 1-101.

Thomas, J.D. 1984. Illustrated guidebook to the shallow water gammaridean amphipods of the Arabian Gulf. ARAMCO annual report, 1984. 102 pages, 63 figs.

WALKER, BRIAN K., Ph.D., Research Scientist

Publications

Walker, B.K. A Model Framework for Predicting Reef Fish Distributions across the Seascape Using GIS Topographic Metrics and Benthic Habitat Associations. Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, 7-11 July 2008. In press.

Gilliam D.S., Walker B.K., Saelens S.J., Fahy D.P., and Kosmynin V.N.. Recovery of injured giant barrel sponges, Xestospongia muta, offshore southeast Florida. Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, 7-11 July 2008. In press.

Fisher L., Banks K., Gilliam D., Dodge R. E., Stout D., Vargas-Angel B., and Walker B. K.. Real time coral stress observations before, during, and after beach renourishment dredging offshore southeast Florida, USA. Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, 7-11 July 2008. In press.

Walker B.K., Jordan L.K.B., and Spieler R.S. Relationship of fish assemblages and topographic complexity on southeastern Florida coral reef habitats. Journal of Coastal Research, special Coastal LIDAR edition. In press.

Foster G., Walker B.K., Riegl B.M. Interpretation of Single-Beam Acoustic Backscatter Using LIDAR-Derived Topographic Complexity and Benthic Habitat Classifications in a Coral Reef Environment. Journal of Coastal Research, special Coastal LIDAR edition. In press.

Walker B.K., Riegl B.M., and R.E. Dodge. 2008. Mapping Coral Reef Habitats in Southeast Florida Using a Combined Technique Approach. Journal of Coastal Research, 24(5), 1138-1150.

Collier C., Ruzicka R., Banks K., Barbieri L., Beal B., Bingham D., Bohnsack J., Brooke S., Craig N., Dodge R., Fisher L., Gadbois N., Gilliam D., Gregg L., Kellison T., Kosmynin V., Lapointe B., McDevitt E., Phipps J., Poulos N., Proni J., Quinn P., Riegl B., Spieler R., Walczak J., Walker B. and Warrick D. 2008.The State of Coral Reef Ecosystems of Southeast Florida. In: J.E. Waddell and A.M. Clarke (eds.), The State of Coral Reef Ecosystems of the United States and Pacific Freely Associated States: 2008. NOAA Technical Memorandum NOS NCCOS 73. NOAA/NCCOS Center for Coastal Monitoring and Assessment's Biogeography Team. Silver Spring, MD. 569 pp.

Banks K.W., Riegl B.M., Richards V.P., Walker B.K., Helmle K.P., Jordan L.K.B., Phipps J., Shivji M.S., Spieler R.E., and Dodge R.E.. 2008. The reef tract of continental southeast Florida (Miami-Dade, Broward, and Palm Beach Counties, USA). In Coral Reefs of the USA (eds. Riegl B.M. and Dodge R.E.), pp. 175-220, Springer.

Rangel Avalos M.A., Jordan L.K.B., Walker B.K., Gilliam D.S., Carvajal Hinojosa E., and Spieler R.E.. Fish and Coral Reef Communities of the Parque Nacional Sistema Arrecifal Veracruzano (Veracruz Coral Reef System National Park) Veracruz, Mexico: Preliminary Results. Proceedings of the 60th Annual Gulf and Caribbean Fisheries Institute Meeting, Punta Cana, Dominican Republic.

Riegl B., Moyer R.P., Walker B.K., Kohler K., Gilliam D., and Dodge R.E.. 2008. A tale of germs, storms, and bombs: geomorphology and coral assemblage structure at Vieques (Puerto Rico) compared to St. Croix (U.S. Virgin Islands). Journal of Coastal Research, 24(4), 1008-1021.

Walker B.K. and R.E. Dodge. 3D Visualization of Coral Reef Habitat. Proceedings to: Seventh International Conference on Remote Sensing for Marine and Coastal Environments, 20-22 May 2002, Miami, Florida, USA.

Moyer R.P., B. Riegl, R.E. Dodge, B.K. Walker, and D.S. Gilliam. Acoustic Remote-Sensing of Reef Benthos in Broward County, Florida (USA). Proceedings to: Seventh International Conference on Remote Sensing for Marine and Coastal Environments, 20-22 May 2002, Miami, Florida, USA.

Riegl B., R.P. Moyer, and B.K. Walker. Integration of satellite remote-sensing of subtidal habitats with vessel-based video survey (Dubai, UAE, Arabian Gulf) Proceedings to: Seventh International Conference on Remote Sensing for Marine and Coastal Environments, 20-22 May 2002, Miami, Florida, USA.

Walker B.K., Henderson, B. and R.S. Spieler. Biological Assessment of Artificial Reef Materials: Concrete Aggregates and Quarry Stone. Aquatic Living Resources 15: (2002) 95-105.

Walker B.K. and R.L. Sherman. Gross brain morphology in the Yellow Stingray, Urobatis jamaicensis. Florida Scientist. Vol. 64, No. 4, Pp.246-249, 2001.

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